PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.008G179700.1
Common NamePOPTR_0008s17980g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family Trihelix
Protein Properties Length: 386aa    MW: 44093.4 Da    PI: 6.6554
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.008G179700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix84.99.7e-2777158286
            trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                         W ++e++ Li +rrem+  ++++k++k+lWe++s kmr++gf rsp++C++kw+nl k++kk k+++++     s +++y+++++
  Potri.008G179700.1  77 WVQDETRSLIGFRREMDGLFNTSKSNKHLWEQISTKMRDKGFDRSPTMCTDKWRNLLKEFKKAKHQDRGS---GSAKMSYYKEID 158
                         ********************************************************************84...556899***997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.7E-467138IPR009057Homeodomain-like
PROSITE profilePS500908.28169133IPR017877Myb-like domain
SMARTSM007170.009773135IPR001005SANT/Myb domain
CDDcd122031.50E-2875140No hitNo description
PfamPF138376.8E-2176160No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MYLSEKPRPL DFYKEEVGPS SSRDNMIIEV VSSNGDLPPL HLHPITAATN PHQMILGESS  60
GDDNHEVKAP KKRAETWVQD ETRSLIGFRR EMDGLFNTSK SNKHLWEQIS TKMRDKGFDR  120
SPTMCTDKWR NLLKEFKKAK HQDRGSGSAK MSYYKEIDEI LRGRNKNSQY KCPTPKVDSY  180
MQFSDKGFED TSISFGPVEA SARPTLNLER RLDHDGHPLA ITAADAVAAS GVPPWNWRET  240
PGNGAESQSF GGRVISVKSG DYTRRIGIDG TTDAIREAIK SAFRLRTKRA FWLEDEDQII  300
RALDRDMPLG NYTLHLDEGL AIKVCLYDQS DHIPMHTEEK IFYTEDDYRD FLSRRGWTCL  360
REFDGYRNID SMDDLRHDAI YRGVS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2jmw_A3e-5171156186DNA binding protein GT-1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.9250.0bud| stem
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269|PubMed:10437822, ECO:0000269|PubMed:15044016, ECO:0000269|PubMed:7866025}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.008G179700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002312646.10.0trihelix transcription factor GT-1 isoform X1
SwissprotQ9FX530.0TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBLB9HLA70.0B9HLA7_POPTR; Trihelix family protein
STRINGPOPTR_0008s17980.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68173248
Representative plantOGRP59331318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13450.10.0Trihelix family protein
Publications ? help Back to Top
  1. Le Gourrierec J,Li YF,Zhou DX
    Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex.
    Plant J., 1999. 18(6): p. 663-8
    [PMID:10417717]