PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.008G173400.1
Common NamePOPTR_0008s17350g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 265aa    MW: 30650.7 Da    PI: 9.4513
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.008G173400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.92.6e-192269148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT+eEd ll+++v+++G g+W+++ar  g++R +k+c++rw +yl
  Potri.008G173400.1 22 KGPWTAEEDRLLIEYVRLHGDGRWSSVARLAGLKRNGKSCRLRWVNYL 69
                        79********************************************97 PP
2Myb_DNA-binding53.17.5e-1775119147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         rg  T+ E+ ++v++++++G++ W+tIar ++ gRt++++k++w+++
  Potri.008G173400.1  75 RGQITPHEESIIVELHARWGNR-WSTIARSLP-GRTDNEIKNYWRTH 119
                         7888******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.9521773IPR017930Myb domain
SuperFamilySSF466893.59E-3019116IPR009057Homeodomain-like
SMARTSM007176.6E-172171IPR001005SANT/Myb domain
PfamPF002497.8E-182269IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.1E-242376IPR009057Homeodomain-like
CDDcd001673.57E-122469No hitNo description
PROSITE profilePS5129419.44474124IPR017930Myb domain
SMARTSM007171.5E-1474122IPR001005SANT/Myb domain
PfamPF002499.3E-1475119IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.5E-2477123IPR009057Homeodomain-like
CDDcd001676.49E-1079120No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MSWGVMAGQL AWGGLIEEGW RKGPWTAEED RLLIEYVRLH GDGRWSSVAR LAGLKRNGKS  60
CRLRWVNYLR PDLKRGQITP HEESIIVELH ARWGNRWSTI ARSLPGRTDN EIKNYWRTHF  120
KKKAKLSPDN SDKARTRHLK RQQFQQQQQQ LQRQQQQTQH QQPLQINQLD MRKIVSLLDE  180
NEDKAPCTPQ MRQEMAPHAI YPNTIEEHVL LYNMFNVNNA SVPEASNEDI LWDGLWNLDD  240
LHGNLGVACA TSKASMQNLV APFC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-27912414128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.008G173400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC2976921e-142KC297692.1 Populus tomentosa MYB gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002311700.10.0transcription factor MYB2
TrEMBLB9HKW30.0B9HKW3_POPTR; Uncharacterized protein
STRINGPOPTR_0008s17350.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118234108
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24310.18e-88myb domain protein 305