PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.008G168200.1 | ||||||||
Common Name | POPTR_0008s16800g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | C2H2 | ||||||||
Protein Properties | Length: 200aa MW: 22094.9 Da PI: 10.8352 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.5 | 0.00044 | 27 | 47 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C +C+ +F++ L Hi +H Potri.008G168200.1 27 CRICDHVFTSVQALIDHIESH 47 ******************999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 8.642 | 25 | 52 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 27 | 47 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence Send to blast |
MAGFGWSLRH GNTLGSKRPL LPSQIACRIC DHVFTSVQAL IDHIESHMVE DVETARWKNG 60 LSFSSSRADP LANPFSFGPS TPSRSPQTGF LGHSRYNFLS STERNPAFSP STPQNIASAQ 120 PIIRAPQSQR SSLARNKYTV GRSQHVPFAL PTQPKLVMEE PHSIDRTRPF LRQLERPFSS 180 GGNHGKRSYA ETLDLTLKL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.008G168200.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011030483.1 | 5e-67 | PREDICTED: uncharacterized protein LOC105129916 | ||||
TrEMBL | B9HKH6 | 1e-144 | B9HKH6_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0008s16800.1 | 1e-145 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14890 | 8 | 12 |
Link Out ? help Back to Top | |
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Phytozome | Potri.008G168200.1 |
Entrez Gene | 7467544 |