PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.008G165700.1 | ||||||||
Common Name | POPTR_0008s16560g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | bHLH | ||||||||
Protein Properties | Length: 167aa MW: 18953.8 Da PI: 9.6415 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38.1 | 2.8e-12 | 15 | 62 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ rE+ RRdr+N++f+ L ++l + ++ K +K +iL A++ +++L Potri.008G165700.1 15 TKACREKLRRDRLNDRFQDLSSILEPG---RQAKTDKPAILDDAIRVLNQL 62 7789**********************9...9*****************999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.55E-7 | 9 | 67 | No hit | No description |
SuperFamily | SSF47459 | 7.72E-14 | 10 | 76 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 13.452 | 11 | 62 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 9.8E-10 | 15 | 62 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.1E-10 | 17 | 68 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.8E-12 | 17 | 84 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 167 aa Download sequence Send to blast |
MIYRGRSDSC SRAGTKACRE KLRRDRLNDR FQDLSSILEP GRQAKTDKPA ILDDAIRVLN 60 QLKAEAQELK ETNEKLLEEI KSLKAEKTEL REEKLTLKAD KEKMEQQSRA VAVPPPRFMP 120 TYPAAYHAAA NKMPVFPSYG LMPMWRYLPP AACDTSRDHE LRPPAA* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.4342 | 0.0 | bud| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.008G165700.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024463694.1 | 1e-118 | transcription factor bHLH104 isoform X1 | ||||
Swissprot | Q8L467 | 4e-75 | BH104_ARATH; Transcription factor bHLH104 | ||||
TrEMBL | A0A3N7FHM4 | 1e-115 | A0A3N7FHM4_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0008s16560.1 | 1e-115 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8179 | 25 | 37 | Representative plant | OGRP755 | 17 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14410.2 | 6e-55 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.008G165700.1 |
Entrez Gene | 18101598 |