PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.008G163900.1 | ||||||||
Common Name | POPTR_0008s16390g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | C2H2 | ||||||||
Protein Properties | Length: 216aa MW: 23996.9 Da PI: 9.4021 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.5 | 5e-05 | 57 | 79 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++ F++ L H+++H Potri.008G163900.1 57 YTCTFCKREFKSAQALGGHMNVH 79 9********************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.43E-6 | 54 | 83 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 7.1E-4 | 55 | 82 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.115 | 57 | 84 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0035 | 57 | 79 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 2.0E-6 | 57 | 80 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 59 | 79 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008361 | Biological Process | regulation of cell size | ||||
GO:0009755 | Biological Process | hormone-mediated signaling pathway | ||||
GO:0010093 | Biological Process | specification of floral organ identity | ||||
GO:0010160 | Biological Process | formation of organ boundary | ||||
GO:0042127 | Biological Process | regulation of cell proliferation | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
MERNSLSSNV NGHSNIGSRA CNNNDKKKKL RDSWNFSSCQ SNGHDYLGGL SWPPRSYTCT 60 FCKREFKSAQ ALGGHMNVHR RDRARLRLSP PRDDQCPILT LNLNPNPSFC TPFNRTIPSL 120 VSPPLTAPST PSLASEVKKW TIGGGNPLDP SSPNLSDLTT NRSRKSFFEN FDGFTRQDGF 180 KIWNKGEIVR LDLDIGLVSD SKDDLDLELR LGSLN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1njq_A | 2e-13 | 52 | 79 | 2 | 29 | superman protein |
2l1o_A | 2e-13 | 52 | 79 | 2 | 29 | Transcriptional regulator SUPERMAN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.008G163900.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX987301 | 0.0 | JX987301.1 Populus tomentosa isolate PtoSUP2 superman gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002311666.3 | 1e-156 | transcriptional regulator SUPERMAN | ||||
TrEMBL | B9HKF8 | 1e-155 | B9HKF8_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0008s16390.1 | 1e-103 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2843 | 31 | 71 | Representative plant | OGRP576 | 15 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23130.1 | 1e-34 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.008G163900.1 |
Entrez Gene | 7467531 |