PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.008G157600.1
Common NamePOPTR_0008s15740g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family HSF
Protein Properties Length: 349aa    MW: 40084 Da    PI: 4.8958
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.008G157600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind117.39.2e-37211122102
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl+k+y+i+ed+++++++sws+ +nsf+++d++ f++++Lp+yFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +gkk+
  Potri.008G157600.1  21 FLTKTYDIIEDASTNHIVSWSRGNNSFIIWDPQAFSTSLLPRYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGKKH 102
                         9****************************************************************999.........************** PP

                         XXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkks 102
                         ll++i+r+k 
  Potri.008G157600.1 103 LLKSIRRRKA 112
                         *******986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.109.1E-3915105IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.3E-6017110IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.5E-3418110IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004475.8E-3221110IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.9E-192144IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.9E-195971IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406084IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.9E-197284IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MASTAIPQPM EGLRDSVPPP FLTKTYDIIE DASTNHIVSW SRGNNSFIIW DPQAFSTSLL  60
PRYFKHNNFS SFVRQLNTYG FRKVDPDRWE FANEGFLRGK KHLLKSIRRR KAPQTLTSQA  120
CVEVGTFGLD GEVNRLRRDK QVLMVELVKL RQQQQTTKAC IQLIERKLKR TENKQQQMMS  180
FLARAMQNPN FVQQLAQQKE MRKELEEAIS KKRRRPIDQG RSNFEVAEFG HGEGVGTFVK  240
IEHQEFGDLS EFDDLSEFDV PEFHNPAMNM QGLSENQLIN LVEERIEKGE EHGNKGNEID  300
EGFWEDLLNE DIIDEEIAVL GSEGEDEEDV SVLVEQLGYL GSSTELRT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-231911018120Heat shock factor protein 1
5d5u_B3e-231911027129Heat shock factor protein 1
5d5v_B3e-231911027129Heat shock factor protein 1
5d5v_D3e-231911027129Heat shock factor protein 1
5hdg_A3e-23191108110Heat shock factor protein 1
5hdn_A3e-23191108110Heat shock factor protein 1
5hdn_B3e-23191108110Heat shock factor protein 1
5hdn_C3e-23191108110Heat shock factor protein 1
5hdn_D3e-23191108110Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00371DAPTransfer from AT3G22830Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.008G157600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP0139860.0KP013986.1 Populus simonii heat shock transcription factor A6b2 (HsfA6b2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002311642.10.0heat stress transcription factor A-6b
SwissprotQ9LUH81e-140HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLB9HKA50.0B9HKA5_POPTR; Uncharacterized protein
STRINGPOPTR_0008s15740.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110034105
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-135heat shock transcription factor A6B