PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Potri.008G149100.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
||||||||
Family | Whirly | ||||||||
Protein Properties | Length: 224aa MW: 24445.8 Da PI: 10.1939 | ||||||||
Description | Whirly family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Whirly | 119.6 | 2.1e-37 | 129 | 212 | 1 | 84 |
Whirly 1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakg 84 s+yk+kaal+v+++ p+f+ ldsg+ kl ++G++ll++a+a+++r+ydW +kq+f+ls+te+++lv+l +k+sceffhdp +++ Potri.008G149100.3 129 SIYKGKAALTVEPRSPEFSPLDSGAYKLVKEGFVLLQFAPAASVRQYDWTRKQVFSLSVTEIGHLVSLDAKGSCEFFHDPNKGK 212 7*******************************************************************************9876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.30.31.10 | 2.3E-41 | 118 | 212 | IPR009044 | ssDNA-binding transcriptional regulator |
SuperFamily | SSF54447 | 2.59E-34 | 122 | 213 | IPR009044 | ssDNA-binding transcriptional regulator |
Pfam | PF08536 | 2.5E-35 | 130 | 212 | IPR013742 | Plant transcription factor |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006281 | Biological Process | DNA repair | ||||
GO:0032211 | Biological Process | negative regulation of telomere maintenance via telomerase | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0045910 | Biological Process | negative regulation of DNA recombination | ||||
GO:0009508 | Cellular Component | plastid chromosome | ||||
GO:0009570 | Cellular Component | chloroplast stroma | ||||
GO:0003697 | Molecular Function | single-stranded DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0042162 | Molecular Function | telomeric DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 224 aa Download sequence Send to blast |
MGMGSWPMDG SINLSVSILD LSSPSSLSVS GSTKKREERG KMLQLNSVSR VSSSPQNPKL 60 WLPQYNSLCS TKSISLNSKT SSTEKKKTLG VKCQYYDQQH KTFTTSSRSS PSSAPPVGES 120 PPKVFVGHSI YKGKAALTVE PRSPEFSPLD SGAYKLVKEG FVLLQFAPAA SVRQYDWTRK 180 QVFSLSVTEI GHLVSLDAKG SCEFFHDPNK GKRYSLVFHV DKS* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1l3a_A | 8e-52 | 118 | 212 | 32 | 126 | p24: plant transcriptional regulator PBF-2 |
1l3a_B | 8e-52 | 118 | 212 | 32 | 126 | p24: plant transcriptional regulator PBF-2 |
1l3a_C | 8e-52 | 118 | 212 | 32 | 126 | p24: plant transcriptional regulator PBF-2 |
1l3a_D | 8e-52 | 118 | 212 | 32 | 126 | p24: plant transcriptional regulator PBF-2 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Pth.11472 | 0.0 | leaf| stem |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Single-stranded DNA-binding protein that acts as a transcriptional activator of the pathogenesis-related gene PR-10a. Upon elicitation, binds a 30bp promoter sequence known as elicitor element response (ERE) and is required for PR-10a expression. {ECO:0000269|PubMed:10948264, ECO:0000269|PubMed:12080340, ECO:0000269|PubMed:14960277}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Potri.008G149100.3 |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EF146407 | 0.0 | EF146407.1 Populus trichocarpa clone WS0117_P12 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002311601.2 | 1e-145 | single-stranded DNA-binding protein WHY1, chloroplastic | ||||
Swissprot | Q9LL85 | 1e-52 | WHY1_SOLTU; Single-stranded DNA-binding protein WHY1, chloroplastic | ||||
TrEMBL | A9PDN0 | 1e-119 | A9PDN0_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0008s14840.1 | 1e-120 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G02740.2 | 1e-48 | ssDNA-binding transcriptional regulator |
Link Out ? help Back to Top | |
---|---|
Phytozome | Potri.008G149100.3 |