PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.008G149100.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family Whirly
Protein Properties Length: 307aa    MW: 33718.1 Da    PI: 9.7559
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.008G149100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly206.82.4e-641292671139
              Whirly   1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvr 91 
                         s+yk+kaal+v+++ p+f+ ldsg+ kl ++G++ll++a+a+++r+ydW +kq+f+ls+te+++lv+l +k+sceffhdp +++s+eGkvr
  Potri.008G149100.1 129 SIYKGKAALTVEPRSPEFSPLDSGAYKLVKEGFVLLQFAPAASVRQYDWTRKQVFSLSVTEIGHLVSLDAKGSCEFFHDPNKGKSDEGKVR 219
                         7****************************************************************************************** PP

              Whirly  92 kalkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139
                         k lkvePlpdGsG+f+nlsv+n++++ +e++++Pv+kae++vl s+++
  Potri.008G149100.1 220 KLLKVEPLPDGSGHFFNLSVQNKVLNIDENIYIPVTKAEYTVLTSAFN 267
                         ********************************************9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.101.6E-77118289IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544471.65E-75122306IPR009044ssDNA-binding transcriptional regulator
PfamPF085362.2E-60130264IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006281Biological ProcessDNA repair
GO:0032211Biological Processnegative regulation of telomere maintenance via telomerase
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0045910Biological Processnegative regulation of DNA recombination
GO:0009508Cellular Componentplastid chromosome
GO:0009570Cellular Componentchloroplast stroma
GO:0003697Molecular Functionsingle-stranded DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003723Molecular FunctionRNA binding
GO:0042162Molecular Functiontelomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MGMGSWPMDG SINLSVSILD LSSPSSLSVS GSTKKREERG KMLQLNSVSR VSSSPQNPKL  60
WLPQYNSLCS TKSISLNSKT SSTEKKKTLG VKCQYYDQQH KTFTTSSRSS PSSAPPVGES  120
PPKVFVGHSI YKGKAALTVE PRSPEFSPLD SGAYKLVKEG FVLLQFAPAA SVRQYDWTRK  180
QVFSLSVTEI GHLVSLDAKG SCEFFHDPNK GKSDEGKVRK LLKVEPLPDG SGHFFNLSVQ  240
NKVLNIDENI YIPVTKAEYT VLTSAFNYIL PYLLGWHAYA NSIKPDDSSR GNNASPRYGG  300
DYEWSR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1l3a_A1e-11211830532219p24: plant transcriptional regulator PBF-2
1l3a_B1e-11211830532219p24: plant transcriptional regulator PBF-2
1l3a_C1e-11211830532219p24: plant transcriptional regulator PBF-2
1l3a_D1e-11211830532219p24: plant transcriptional regulator PBF-2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.114720.0leaf| stem
Functional Description ? help Back to Top
Source Description
UniProtSingle-stranded DNA-binding protein that acts as a transcriptional activator of the pathogenesis-related gene PR-10a. Upon elicitation, binds a 30bp promoter sequence known as elicitor element response (ERE) and is required for PR-10a expression. {ECO:0000269|PubMed:10948264, ECO:0000269|PubMed:12080340, ECO:0000269|PubMed:14960277}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.008G149100.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1464070.0EF146407.1 Populus trichocarpa clone WS0117_P12 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002311601.20.0single-stranded DNA-binding protein WHY1, chloroplastic
SwissprotQ9LL851e-114WHY1_SOLTU; Single-stranded DNA-binding protein WHY1, chloroplastic
TrEMBLA9PDN00.0A9PDN0_POPTR; Uncharacterized protein
STRINGPOPTR_0008s14840.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF64163251
Representative plantOGRP23161635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02740.21e-111ssDNA-binding transcriptional regulator