PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.008G148200.1
Common NamePOPTR_0008s14770g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family HD-ZIP
Protein Properties Length: 290aa    MW: 32985.9 Da    PI: 6.3152
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.008G148200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.93.5e-1883136356
                         --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         k+++++ eq+++Le+ Fe  +++  e++ +LA+ lgL+ rq+ +WFqNrRa++k
  Potri.008G148200.1  83 KKRRLSMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWK 136
                         45689************************************************9 PP
2HD-ZIP_I/II130.18.9e-4282172191
         HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                         ekkrrls eqvk+LE++Fe  +kLeperK++lar+Lglqprq+a+WFqnrRAR+ktkqlE dy+ Lkr++da+k+en++L++++++L++e+
  Potri.008G148200.1  82 EKKRRLSMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEIDYDLLKRQFDAVKAENNALQTQNQRLHAEI 172
                         69**************************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.1E-2066140IPR009057Homeodomain-like
PROSITE profilePS5007117.50878138IPR001356Homeobox domain
SMARTSM003899.7E-1881142IPR001356Homeobox domain
CDDcd000864.85E-1683139No hitNo description
PfamPF000461.7E-1583136IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.5E-1985145IPR009057Homeodomain-like
PRINTSPR000311.1E-5109118IPR000047Helix-turn-helix motif
PROSITE patternPS000270113136IPR017970Homeobox, conserved site
PRINTSPR000311.1E-5118134IPR000047Helix-turn-helix motif
PfamPF021832.5E-14138178IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009744Biological Processresponse to sucrose
GO:0048826Biological Processcotyledon morphogenesis
GO:0080022Biological Processprimary root development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MTCNGMAFFP TNFMLQSSHD QDDHQPPTSL NPILPSCAPR DFHGVAPFLG KRSSMSFSGI  60
DVCHEEGNGE DELSDDGSQA GEKKRRLSME QVKTLEKNFE LGNKLEPERK MQLARALGLQ  120
PRQIAIWFQN RRARWKTKQL EIDYDLLKRQ FDAVKAENNA LQTQNQRLHA EILALKSREP  180
TESINLNKET EGSCSNRSEN SSDIKLDISR TPAIDSPLPN HHPTSRPFFP SSSIRPTGIA  240
QLNQNNSSRP DFQYQKMDHI VKEESLTNML CSIEDQSGFW PWLEQQQFN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1130138RRARWKTKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.108560.0leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in leaves and flowers. {ECO:0000269|PubMed:16055682}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269|PubMed:11292072}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00225DAPTransfer from AT1G69780Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.008G148200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024462327.10.0homeobox-leucine zipper protein ATHB-13
SwissprotQ8LC031e-119ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13
TrEMBLB9HJT50.0B9HJT5_POPTR; Uncharacterized protein
STRINGPOPTR_0008s14770.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF127133106
Representative plantOGRP12916189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.11e-116HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Chan RL
    Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development.
    J. Exp. Bot., 2015. 66(19): p. 5929-43
    [PMID:26136262]
  3. Wang X, et al.
    Overexpressed BRH1, a RING finger gene, alters rosette leaf shape in Arabidopsis thaliana.
    Sci China Life Sci, 2018. 61(1): p. 79-87
    [PMID:28887625]
  4. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]