PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.008G144200.1
Common NamePOPTR_0008s14320g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C3H
Protein Properties Length: 743aa    MW: 81572.5 Da    PI: 5.3408
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.008G144200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.71.7e-07126148427
                         ---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                         ++C ff++ G+C  Gd+C F+Hgp
  Potri.008G144200.1 126 VPCIFFQQ-GICVKGDKCAFSHGP 148
                         69******.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.8033160IPR000571Zinc finger, CCCH-type
SMARTSM003560.00183259IPR000571Zinc finger, CCCH-type
PfamPF156632.1E-113286No hitNo description
PROSITE profilePS5010310.5126288IPR000571Zinc finger, CCCH-type
SMARTSM003560.0526487IPR000571Zinc finger, CCCH-type
SMARTSM003568.0E-5122148IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.521122149IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.97E-6123147IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-4123148IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-4126148IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 743 aa     Download sequence    Send to blast
MVAATQPQQH PSTAAASTTT ANATSVEDEA LKRNTDCVYF LASPLTCKKG SECEYRHSEY  60
ARVNPRDCYY WLNGNCLNPK CGFRHPPLDG LFGTQAIASA GSSLPPSHTA VASATHAPHN  120
PGKQAVPCIF FQQGICVKGD KCAFSHGPNL AGNKVSQPMA PTPGAEALPP KKAFGGLQKC  180
AQEHKIPQTK ISKAVEAPSV AKPVSKAEIV HARNIAGVVR SAVPPTSMDG EIPRYKAANL  240
PLMVNGNLSR SSRLHQLQVA DDHVIQNGKD ADEYLRESSP GFDVLVDNEL RDSDYYHGEE  300
QLGRTTGNEG RNLNSVDEYD TGHSADYGLL HDDQEMYRDP RGYDSYELTP GQHAWEQHRA  360
SSERMLMAPV LPERRGYAKA DSPEHTEESD LRYRLSKQRR VNGLRSVVSN DFVPENHVEE  420
RGYRGSSRRD SHHLPSHESS ISSRLRGRIK LPGRSPNDGG DVRAEREIDR GRNRGRLSPV  480
RSPVTSQQGR LRDRMKARVE EDYNEGRSFR GPQVRGELMD DGSTDFAGPK SLAELKGGKN  540
AEGKLQQSLG KRKHSEDNPS SDAVLSFEGP MPLSEILKRK REGGAAASRS GISSVIKDNN  600
NLKESKQSLI SNSKKADAEM QSGISSVSKD DNSSQMLKNK EESKVATDGA IGTEENIEIA  660
HGQSSQLPNP SEIETEDGII ADDGMEDHEY EGDDQRDDNY EYEQVDEGEY NYEEGENIDG  720
EEEYEDEEDG EDFAKKIGVV IS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.008G144200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002312505.30.0zinc finger CCCH domain-containing protein 17
TrEMBLA0A2K1ZH600.0A0A2K1ZH60_POPTR; Uncharacterized protein
STRINGPOPTR_0008s14320.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF92273137
Representative plantOGRP24551220