PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.008G135500.3
Common NamePOPTR_0008s13490g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ARR-B
Protein Properties Length: 580aa    MW: 62606.7 Da    PI: 6.3814
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.008G135500.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like89.13.9e-28131184155
             G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                         kpr++W+ eLH++Fv+av++L G++kA+Pk+ilelm+v+gLt+e+v+SHLQk+Rl
  Potri.008G135500.3 131 KPRVVWSVELHQQFVSAVNHL-GIDKAVPKRILELMNVPGLTRENVASHLQKFRL 184
                         79*******************.********************************8 PP
2Response_reg326.5e-1215653109
                         CTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
        Response_reg  53 mpgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109
                         mp+mdG++ll+     e++lp+i+++a g  + + + ++ Ga d+l Kp+ +eel +
  Potri.008G135500.3   1 MPDMDGFKLLELVGL-EMDLPVIMMSADGRTSAVMRGISHGACDYLIKPIREEELKN 56 
                         9*********87754.558***********************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd001565.26E-13162No hitNo description
PfamPF000728.4E-9156IPR001789Signal transduction response regulator, receiver domain
PIRSFPIRSF0363923.6E-1211560IPR017053Response regulator B-type, plant
PROSITE profilePS5011024.654162IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:3.40.50.23008.0E-21182No hitNo description
SuperFamilySSF521723.84E-16173IPR011006CheY-like superfamily
Gene3DG3DSA:1.10.10.601.7E-29128189IPR009057Homeodomain-like
PROSITE profilePS5129410.954128187IPR017930Myb domain
SuperFamilySSF466892.33E-19129188IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-24131184IPR006447Myb domain, plants
PfamPF002491.9E-6133182IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 580 aa     Download sequence    Send to blast
MPDMDGFKLL ELVGLEMDLP VIMMSADGRT SAVMRGISHG ACDYLIKPIR EEELKNIWQH  60
VIRKKWNENK EQEHSGSFED NDRHKRGNDA ENASSVSEGA EGVLKGQKKR SIAKDEDDAE  120
LENDDPSASK KPRVVWSVEL HQQFVSAVNH LGIDKAVPKR ILELMNVPGL TRENVASHLQ  180
KFRLYLKRLS GVAQQGGISN PFCGLLDSNV KLNPLGRFDI QVLAASGQIP PQTLAALHAE  240
LFGHPAGSMV TTVDQPALLQ ASVQGPKCIP AEHGMAFGQP LVKCQTNMSK HFPQNVVSAE  300
EVATGFVAWP SNSVGTVGPI SNLGGMSSKN SNMLMDVVQQ QKQQQQSPQL PSLPEPSRII  360
NVQPSCLVVP SQSSATFQAG NSPASVNQNC SYSRSPMIDY SLLSPQSNNS SLNIGQISNG  420
DLKTTGVSGY SGSGSISPLS SCSVNPDNTS QQGQSSTMTI RAARQLPGLG PNISNFQGSY  480
GAKSSEVLDQ GPLRNLGFVG KCTSIPSRLA VDEFESTMSN LEHEKLYMET NGNKVKQEPN  540
SNAVKQEPNV EFMDNAKVLI PILPQLPPNT SDLMSVFKE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-24127190164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.008G135500.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFN9081400.0FN908140.1 Populus x canadensis mRNA for putative B-type response regulator 15 (rr15 gene), cultivar Dorskamp.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002311532.20.0two-component response regulator ORR21
SwissprotA2XE311e-134ORR21_ORYSI; Two-component response regulator ORR21
SwissprotQ8H7S71e-134ORR21_ORYSJ; Two-component response regulator ORR21
TrEMBLB9HJH20.0B9HJH2_POPTR; Two-component response regulator
STRINGPOPTR_0008s13490.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.17e-88response regulator 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]