PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.008G135500.1
Common NamePOPTR_0008s13490g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ARR-B
Protein Properties Length: 672aa    MW: 72486.2 Da    PI: 6.7397
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.008G135500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like88.94.8e-28223276155
             G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                         kpr++W+ eLH++Fv+av++L G++kA+Pk+ilelm+v+gLt+e+v+SHLQk+Rl
  Potri.008G135500.1 223 KPRVVWSVELHQQFVSAVNHL-GIDKAVPKRILELMNVPGLTRENVASHLQKFRL 276
                         79*******************.********************************8 PP
2Response_reg76.21.2e-25401481109
                         EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHH CS
        Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalea 89 
                         vl+vdD+ + ++ll+++l++  y +v++++++++al+ll+e++  +D++l D+ mp+mdG++ll+     e++lp+i+++a g  + + + 
  Potri.008G135500.1  40 VLVVDDDITCLRLLEKMLRRCLY-HVTTCSQATAALKLLRERKgcFDVVLSDVHMPDMDGFKLLELVGL-EMDLPVIMMSADGRTSAVMRG 128
                         89*********************.****************************************87754.558****************** PP

                         HHTTESEEEESS--HHHHHH CS
        Response_reg  90 lkaGakdflsKpfdpeelvk 109
                         ++ Ga d+l Kp+ +eel +
  Potri.008G135500.1 129 ISHGACDYLIKPIREEELKN 148
                         *****************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363927.5E-16315652IPR017053Response regulator B-type, plant
SuperFamilySSF521726.55E-3637165IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23009.2E-4337174No hitNo description
SMARTSM004482.2E-3038150IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.74439154IPR001789Signal transduction response regulator, receiver domain
PfamPF000729.0E-2340148IPR001789Signal transduction response regulator, receiver domain
CDDcd001567.58E-2841154No hitNo description
PROSITE profilePS5129410.954220279IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.0E-29220281IPR009057Homeodomain-like
SuperFamilySSF466892.87E-19221280IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-24223276IPR006447Myb domain, plants
PfamPF002492.2E-6225274IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 672 aa     Download sequence    Send to blast
MAALQRVAPS LGTSASTYGS CKGAGADVIV SDQFPAGLRV LVVDDDITCL RLLEKMLRRC  60
LYHVTTCSQA TAALKLLRER KGCFDVVLSD VHMPDMDGFK LLELVGLEMD LPVIMMSADG  120
RTSAVMRGIS HGACDYLIKP IREEELKNIW QHVIRKKWNE NKEQEHSGSF EDNDRHKRGN  180
DAENASSVSE GAEGVLKGQK KRSIAKDEDD AELENDDPSA SKKPRVVWSV ELHQQFVSAV  240
NHLGIDKAVP KRILELMNVP GLTRENVASH LQKFRLYLKR LSGVAQQGGI SNPFCGLLDS  300
NVKLNPLGRF DIQVLAASGQ IPPQTLAALH AELFGHPAGS MVTTVDQPAL LQASVQGPKC  360
IPAEHGMAFG QPLVKCQTNM SKHFPQNVVS AEEVATGFVA WPSNSVGTVG PISNLGGMSS  420
KNSNMLMDVV QQQKQQQQSP QLPSLPEPSR IINVQPSCLV VPSQSSATFQ AGNSPASVNQ  480
NCSYSRSPMI DYSLLSPQSN NSSLNIGQIS NGDLKTTGVS GYSGSGSISP LSSCSVNPDN  540
TSQQGQSSTM TIRAARQLPG LGPNISNFQG SYGAKSSEVL DQGPLRNLGF VGKCTSIPSR  600
LAVDEFESTM SNLEHEKLYM ETNGNKVKQE PNSNAVKQEP NVEFMDNAKV LIPILPQLPP  660
NTSDLMSVFK E*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-24219282164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.008G135500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFN9081400.0FN908140.1 Populus x canadensis mRNA for putative B-type response regulator 15 (rr15 gene), cultivar Dorskamp.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002311532.20.0two-component response regulator ORR21
SwissprotA2XE311e-166ORR21_ORYSI; Two-component response regulator ORR21
SwissprotQ8H7S71e-166ORR21_ORYSJ; Two-component response regulator ORR21
TrEMBLB9HJH20.0B9HJH2_POPTR; Two-component response regulator
STRINGPOPTR_0008s13490.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118082433
Representative plantOGRP29217120
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16857.11e-120response regulator 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]