PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.008G133700.3

Common Name

POPTR_0008s13320g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

C2H2

Protein Properties

Length: 353aa MW: 38207.1 Da PI: 8.1969

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.008G133700.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.2	0.0012	125	147	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+Cg+s+ + ++ H t+ Potri.008G133700.3 125 FECPICGQSYQSEEEVSIHVETC 147 89**********99999998887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd09212	2.71E-15	182	242	No hit	No description
SuperFamily	SSF143503	5.62E-14	190	242	IPR018997	PUB domain
Pfam	PF09409	8.9E-13	191	242	IPR018997	PUB domain
SMART	SM00580	5.7E-10	193	268	IPR018997	PUB domain
PROSITE profile	PS50033	10.095	243	327	IPR001012	UBX domain
SuperFamily	SSF54236	8.01E-10	243	327	IPR029071	Ubiquitin-related domain
Gene3D	G3DSA:3.10.20.90	1.2E-6	245	326	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0050832	Biological Process	defense response to fungus
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence Send to blast
MDDMKDKFKG FMKKVSSSSS PSKFKGQGRV LGGGGSTPSQ SSSGPTNPLH ARYSQPVNSN 60 NSKPKPNPSS SLTSSSNSKP LPEKRSNLDQ KKPTPANKTT NGLDPFDSLI TTSKRSQNGY 120 SLNVFECPIC GQSYQSEEEV SIHVETCVNN SNANSPVKSN DRVVGDDSAV EESSGSELET 180 CVSAYLSGKP LEGSVEVVLR LLRNIVKEPA NAKFRRIRMG NPKIREAVTE VAGGVELLEI 240 VGKRYKRTII RIQFPDGVVL QGVFAPWEST TALYEFVSAA LKEPGLEFEL LHPVAVKRRV 300 IPHIPSVGER ATTLDAEDLV PSALIKFRPI ETDSTVFTGL CNELLEISEP LN*

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence Send to blast

MDDMKDKFKG FMKKVSSSSS PSKFKGQGRV LGGGGSTPSQ SSSGPTNPLH ARYSQPVNSN  60
NSKPKPNPSS SLTSSSNSKP LPEKRSNLDQ KKPTPANKTT NGLDPFDSLI TTSKRSQNGY  120
SLNVFECPIC GQSYQSEEEV SIHVETCVNN SNANSPVKSN DRVVGDDSAV EESSGSELET  180
CVSAYLSGKP LEGSVEVVLR LLRNIVKEPA NAKFRRIRMG NPKIREAVTE VAGGVELLEI  240
VGKRYKRTII RIQFPDGVVL QGVFAPWEST TALYEFVSAA LKEPGLEFEL LHPVAVKRRV  300
IPHIPSVGER ATTLDAEDLV PSALIKFRPI ETDSTVFTGL CNELLEISEP LN*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pth.12111	0.0	bud\| catkin

Functional Description ? help Back to Top
Source	Description
UniProt	Facilitates the interaction of SYP31 and CDC48A, thereby regulating an CDC48A membrane-associated function (Ref.8). Appears to act as a negative regulator mediating the powdery mildew-plant interaction (PubMed:19176722, PubMed:23301616). {ECO:0000269\|PubMed:19176722, ECO:0000269\|PubMed:23301616, ECO:0000269\|Ref.8}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.008G133700.3

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced in response to powdery mildew and by benzothiadiazole (BTH) treatment. {ECO:0000269\|PubMed:19176722}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002311527.2	1e-142	plant UBX domain-containing protein 2
Swissprot	Q9ZU93	8e-68	PUX2_ARATH; Plant UBX domain-containing protein 2
TrEMBL	B9HJF4	1e-141	B9HJF4_POPTR; Uncharacterized protein
STRING	POPTR_0008s13320.1	1e-142	(Populus trichocarpa)

Link Out ? help Back to Top
Phytozome	Potri.008G133700.3
Entrez Gene	7482908

Publications ? help Back to Top
Suzuki T,Park H,Till EA,Lennarz WJ The PUB domain: a putative protein-protein interaction domain implicated in the ubiquitin-proteasome pathway. Biochem. Biophys. Res. Commun., 2001. 287(5): p. 1083-7 [PMID:11587532] Rancour DM,Park S,Knight SD,Bednarek SY Plant UBX domain-containing protein 1, PUX1, regulates the oligomeric structure and activity of arabidopsis CDC48. J. Biol. Chem., 2004. 279(52): p. 54264-74 [PMID:15498773] Chandran D,Rickert J,Cherk C,Dotson BR,Wildermuth MC Host cell ploidy underlying the fungal feeding site is a determinant of powdery mildew growth and reproduction. Mol. Plant Microbe Interact., 2013. 26(5): p. 537-45 [PMID:23301616]