PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.008G128500.1 | ||||||||
Common Name | POPTR_0008s12750g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | MYB | ||||||||
Protein Properties | Length: 222aa MW: 24947.4 Da PI: 9.2221 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.1 | 1.5e-16 | 14 | 60 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g+W+++Ed++l+d+++++G g+W+ ++ g+ R++k+c++rw +yl Potri.008G128500.1 14 GAWSKQEDQKLIDYIRKHGEGCWSYLPQAAGLLRCGKSCRLRWINYL 60 79*****************************99************97 PP | |||||||
2 | Myb_DNA-binding | 52.3 | 1.3e-16 | 66 | 111 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++ ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l Potri.008G128500.1 66 RGNFAEDEEDLIIKLHALLGNR-WSLIAGRLP-GRTDNEVKNYWNSHL 111 8999******************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.614 | 8 | 60 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.79E-28 | 11 | 107 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.5E-11 | 12 | 62 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.6E-14 | 14 | 60 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-22 | 14 | 67 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.15E-10 | 15 | 60 | No hit | No description |
PROSITE profile | PS51294 | 26.906 | 61 | 115 | IPR017930 | Myb domain |
SMART | SM00717 | 1.0E-15 | 65 | 113 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.3E-15 | 66 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.81E-12 | 68 | 111 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.1E-26 | 68 | 116 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MGKPGRDKQA KNQGAWSKQE DQKLIDYIRK HGEGCWSYLP QAAGLLRCGK SCRLRWINYL 60 RPDLKRGNFA EDEEDLIIKL HALLGNRWSL IAGRLPGRTD NEVKNYWNSH LRRKLINMGV 120 DPNNHRLKQN LLRPHNPPNP ASASSSGLQI QAIQKPTKPH VDKEQVSDAL SCVEDDSCAL 180 PDLNLDLTAR FHYPSIPHVE GNPKDSSPLD IAPSPTLLLF Q* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-29 | 13 | 115 | 7 | 108 | B-MYB |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Widely expressed at low level. Highly expressed in siliques. Weakly expressed in seedlings, young and mature leaves, cauline leaves, stems, flower buds and roots. {ECO:0000269|PubMed:9839469}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor involved in regulation of protection against UV. Mediates transcriptional repression of CYP73A5, the gene encoding trans-cinnamate 4-monooxygenase, thereby regulating the accumulation of the UV-protectant compound sinapoylmalate. {ECO:0000269|PubMed:11080161}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.008G128500.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by exposure to UV-B light. {ECO:0000269|PubMed:11080161}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ126857 | 1e-103 | KJ126857.1 Malus hybrid cultivar MYB2 (MYB2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002311495.2 | 1e-163 | transcription repressor MYB4 | ||||
Swissprot | Q9SZP1 | 1e-71 | MYB4_ARATH; Transcription repressor MYB4 | ||||
TrEMBL | B9HJ99 | 1e-162 | B9HJ99_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0008s12750.1 | 1e-162 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF264 | 34 | 221 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38620.1 | 5e-72 | myb domain protein 4 |
Link Out ? help Back to Top | |
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Phytozome | Potri.008G128500.1 |
Entrez Gene | 7482876 |