PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.008G120400.2 | ||||||||
Common Name | POPTR_0008s11930g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | CO-like | ||||||||
Protein Properties | Length: 415aa MW: 45850.5 Da PI: 5.4118 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 30.2 | 9.3e-10 | 16 | 59 | 3 | 40 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 +r C+ + +k+++++C ++ +lC+ C ++ H+ H++v Potri.008G120400.2 16 ARACDSCIKKRARWYCAADDAFLCQACDSSVHSAnplarrHERV 59 578*****************************667888888876 PP | |||||||
2 | CCT | 68 | 2.5e-23 | 366 | 409 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++ Potri.008G120400.2 366 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRT 409 9*****************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.978 | 14 | 61 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 6.7E-11 | 14 | 61 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 8.7E-8 | 16 | 59 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 4.47E-10 | 17 | 61 | No hit | No description |
PROSITE profile | PS51017 | 16.083 | 366 | 408 | IPR010402 | CCT domain |
Pfam | PF06203 | 5.5E-18 | 366 | 408 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0016020 | Cellular Component | membrane | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 415 aa Download sequence Send to blast |
MICIKSSANA VGGKTARACD SCIKKRARWY CAADDAFLCQ ACDSSVHSAN PLARRHERVR 60 LKTASLKSLD LCSKENSVPS WHGGFTRKAR TPRHGKPVSQ SKIAETIRNI PIPLVPEVGS 120 DEISHEDNEE EHLLYRVPIF DPFVADLCAS TTISNEAGAI VPAGGNDGTD QRVADSNGSL 180 PGFLPSDMDL AEFAADMESL LGRGLENESF GMEELGLMDC KEEKEFEVKG FPLWNGKVKV 240 EDEENASTDM AKDPIFELSF DYNSSATCGE EDEKVGIEEG DLKNTRGEYE DDDGAKRKIL 300 LSLDYEAVMT AWASQGSPWT NGNRPDFDPD ECWPDCMGIC GAQLHHPYGD MISGLGAHPA 360 MVDGGREARV SRYREKRRTR LFSKKIRYEV RKLNAEKRPR MKGRFVKRTT LAGK* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 376 | 392 | RRTRLFSKKIRYEVRKL |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.131 | 0.0 | leaf |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.008G120400.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF147081 | 0.0 | EF147081.1 Populus trichocarpa clone WS01227_E03 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002311458.2 | 0.0 | zinc finger protein CONSTANS-LIKE 16 | ||||
TrEMBL | A9PFG3 | 0.0 | A9PFG3_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0008s11930.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25440.1 | 1e-107 | B-box type zinc finger protein with CCT domain |
Link Out ? help Back to Top | |
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Phytozome | Potri.008G120400.2 |
Entrez Gene | 7483952 |
Publications ? help Back to Top | |||
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