PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.008G120400.1
Common NamePOPTR_0008s11930g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family CO-like
Protein Properties Length: 445aa    MW: 49263.5 Da    PI: 5.5873
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.008G120400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box30.11e-091659340
            zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                        +r C+ + +k+++++C  ++ +lC+ C ++ H+       H++v
  Potri.008G120400.1 16 ARACDSCIKKRARWYCAADDAFLCQACDSSVHSAnplarrHERV 59
                        578*****************************667888888876 PP
2CCT67.92.7e-23396439144
                 CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                         Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++
  Potri.008G120400.1 396 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRT 439
                         9*****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.9781461IPR000315B-box-type zinc finger
SMARTSM003366.7E-111461IPR000315B-box-type zinc finger
PfamPF006439.5E-81659IPR000315B-box-type zinc finger
CDDcd000215.15E-101761No hitNo description
PfamPF062036.0E-18396438IPR010402CCT domain
PROSITE profilePS5101716.083396438IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0016020Cellular Componentmembrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MICIKSSANA VGGKTARACD SCIKKRARWY CAADDAFLCQ ACDSSVHSAN PLARRHERVR  60
LKTASLKSLD LCSKENSVPS WHGGFTRKAR TPRHGKPVSQ SKIAETIRNI PIPLVPEVGS  120
DEISHEDNEE EHLLYRVPIF DPFVADLCAS TTISNEAGAI VPAGGNDGTD QRVADSNGVE  180
SKILIGAIER RDVESLPGFL PSDMDLAEFA ADMESLLGRG LENESFGMEE LGLMDCKEEK  240
EFEVKGFPLW NGKVKVEDEE NASVERKAVR KCYAGIETDM AKDPIFELSF DYNSSATCGE  300
EDEKVGIEEG DLKNTRGEYE DDDGAKRKIL LSLDYEAVMT AWASQGSPWT NGNRPDFDPD  360
ECWPDCMGIC GAQLHHPYGD MISGLGAHPA MVDGGREARV SRYREKRRTR LFSKKIRYEV  420
RKLNAEKRPR MKGRFVKRTT LAGK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1406422RRTRLFSKKIRYEVRKL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.1310.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.008G120400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1470810.0EF147081.1 Populus trichocarpa clone WS01227_E03 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002311458.20.0zinc finger protein CONSTANS-LIKE 16
TrEMBLA9PFG30.0A9PFG3_POPTR; Uncharacterized protein
STRINGPOPTR_0008s11930.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14733392
Representative plantOGRP8021649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.11e-105B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ralph SG, et al.
    Analysis of 4,664 high-quality sequence-finished poplar full-length cDNA clones and their utility for the discovery of genes responding to insect feeding.
    BMC Genomics, 2008. 9: p. 57
    [PMID:18230180]