PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.008G120100.1
Common NamePOPTR_0008s11900g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 311aa    MW: 34202 Da    PI: 4.4126
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.008G120100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.62.3e-1689137254
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 
                         +  GVr++k +g+W+AeIr p++   + r +lg+f t eeAa+a++a ++++e
  Potri.008G120100.1  89 KPVGVRQRK-WGKWAAEIRNPVT---KVRTWLGTFNTLEEAAQAYEAKKQEYE 137
                         789*****9.**********654...5***********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.18E-1988131No hitNo description
SMARTSM003804.7E-1289148IPR001471AP2/ERF domain
PfamPF008473.5E-1189138IPR001471AP2/ERF domain
PROSITE profilePS5103217.18789146IPR001471AP2/ERF domain
PRINTSPR003677.7E-790101IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-1591136IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.4E-1992133IPR001471AP2/ERF domain
PRINTSPR003677.7E-7112128IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MRKIRVICND PYATETDSSD DESDKRSLKK RFVREINIPL AVSPQPKALE PESSCQDSNN  60
SAKPPSKRRR VLPKTPTSTT EEKKLAPKKP VGVRQRKWGK WAAEIRNPVT KVRTWLGTFN  120
TLEEAAQAYE AKKQEYEALA LTMAASEKSQ IMSSSAGVLQ SHSHSSSKNE GSSASDETDD  180
SVVSHTSPAS VLELDTSVVS NVTGDCGLLI KDEDICASVA DLDIPDLAFM TDPLASCPFD  240
HDLNLGQEVG NLIDEFGRFY DDYCGIVDLD ICGLNSDEPS DLPDYDFEFG NEEFSYLDDH  300
QQKPLNIACL *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16670KRRRV
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.008G120100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX2758310.0JX275831.1 Populus deltoides isolate Q18 ERF mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002311456.10.0ethylene-responsive transcription factor ERF119
RefseqXP_024463363.10.0ethylene-responsive transcription factor ERF119
TrEMBLB9HJ240.0B9HJ24_POPTR; ERF family protein
STRINGPOPTR_0008s11900.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26903472
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25890.22e-34ERF family protein