PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.008G117500.2

Common Name

POPTR_0008s11630g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

G2-like

Protein Properties

Length: 380aa MW: 41495.8 Da PI: 7.5205

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.008G117500.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.2	6.9e-32	218	273	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH+rF++a++qLGGs+ AtPk+i+elmkv+gLt+++vkSHLQkYRl+ Potri.008G117500.2 218 KQRRCWSPELHRRFLHALRQLGGSHAATPKQIRELMKVDGLTNDEVKSHLQKYRLH 273 79****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	6.4E-29	215	276	IPR009057	Homeodomain-like
PROSITE profile	PS51294	15.454	215	275	IPR017930	Myb domain
SuperFamily	SSF46689	1.49E-18	216	276	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.2E-26	218	273	IPR006447	Myb domain, plants
Pfam	PF00249	2.0E-7	220	271	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009737	Biological Process	response to abscisic acid
GO:0055062	Biological Process	phosphate ion homeostasis
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 380 aa Download sequence Send to blast
MDFAEKIQRC GEYVEALEEE RRKIQVFERE LPLCLELVTQ AIEACKRELS GTTTEYNMHG 60 QSECSEQTSS EGPVLEEFIP IKRTHSYDEN DNENDDHQEQ QSHDNSKRNK TSISSGNNDH 120 KKKSDWLRSV QLWNHSPDLP QKQVLKAAVT EVKRNGAGGA FQPFHREKSI GKTSNQAIAK 180 APTSVPASTT SSTAVVATGG IGGGSNKKED IDGGNQRKQR RCWSPELHRR FLHALRQLGG 240 SHAATPKQIR ELMKVDGLTN DEVKSHLQKY RLHTRRPSPT IHNNSNQQAP QFVVVGGIWV 300 PPPEYAAVAA TTASAETSPI SAANGIYAPI AAAPPTVPQK PHHVQYEPLQ SEGGGSHSEG 360 GAHSNNSPAT SSSTHTTTT*

Sequence ? help Back to Top

Protein Sequence Length: 380 aa Download sequence Send to blast

MDFAEKIQRC GEYVEALEEE RRKIQVFERE LPLCLELVTQ AIEACKRELS GTTTEYNMHG  60
QSECSEQTSS EGPVLEEFIP IKRTHSYDEN DNENDDHQEQ QSHDNSKRNK TSISSGNNDH  120
KKKSDWLRSV QLWNHSPDLP QKQVLKAAVT EVKRNGAGGA FQPFHREKSI GKTSNQAIAK  180
APTSVPASTT SSTAVVATGG IGGGSNKKED IDGGNQRKQR RCWSPELHRR FLHALRQLGG  240
SHAATPKQIR ELMKVDGLTN DEVKSHLQKY RLHTRRPSPT IHNNSNQQAP QFVVVGGIWV  300
PPPEYAAVAA TTASAETSPI SAANGIYAPI AAAPPTVPQK PHHVQYEPLQ SEGGGSHSEG  360
GAHSNNSPAT SSSTHTTTT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-12	218	271	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-12	218	271	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-12	218	271	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-12	218	271	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-12	218	271	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-12	218	271	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-12	218	271	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-12	218	271	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-12	218	271	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-12	218	271	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-12	218	271	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-12	218	271	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in phosphate signaling in roots. {ECO:0000250\|UniProtKB:Q9FX67}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00218	DAP	Transfer from AT1G68670	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.008G117500.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024462049.1	0.0	transcription factor HHO2
Swissprot	Q9FPE8	1e-106	HHO3_ARATH; Transcription factor HHO3
TrEMBL	A0A2I4KKV8	0.0	A0A2I4KKV8_POPTR; G2-like family protein
STRING	POPTR_0008s11630.1	0.0	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68670.1	2e-98	G2-like family protein

Link Out ? help Back to Top
Phytozome	Potri.008G117500.2
Entrez Gene	7483936

Publications ? help Back to Top
Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis. Plant Cell Physiol., 2016. 57(6): p. 1142-52 [PMID:27016098]