PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.008G116600.2 | ||||||||
Common Name | POPTR_0008s11550g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | NAC | ||||||||
Protein Properties | Length: 386aa MW: 42886.5 Da PI: 4.908 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 104.9 | 1e-32 | 14 | 153 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.....leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk... 79 lp+G++F+P+d+e++++ L+k +g ++ e+i++v+ i++++P++Lp vk++ + +fF+++ k+y+tg+rk+r+++ Potri.008G116600.2 14 LPRGVKFDPSDQEIIWHLLAKAGNGGIkshpfIK--EFIPTVEnddgICYTHPKNLP-GVKQDGSISHFFHRAIKAYNTGTRKRRKIQgdd 101 799************8777766555444543322..33444422345**********.677777888******************855555 PP NAM 80 ..sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tg++k+v+ +g ++g+kk++v+y + r k+ekt+Wvmh+y+l Potri.008G116600.2 102 sgDVRWHKTGRTKPVIL-DGVQKGCKKIMVLYtsTVRGGKAEKTNWVMHQYHL 153 44778************.99************5545888999*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.83E-37 | 6 | 172 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 31.209 | 14 | 172 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.9E-14 | 15 | 153 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000077 | Biological Process | DNA damage checkpoint | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010332 | Biological Process | response to gamma radiation | ||||
GO:0040020 | Biological Process | regulation of meiotic nuclear division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 386 aa Download sequence Send to blast |
MNKVGEVVQE WPGLPRGVKF DPSDQEIIWH LLAKAGNGGI KSHPFIKEFI PTVENDDGIC 60 YTHPKNLPGV KQDGSISHFF HRAIKAYNTG TRKRRKIQGD DSGDVRWHKT GRTKPVILDG 120 VQKGCKKIMV LYTSTVRGGK AEKTNWVMHQ YHLGTGEDER DGEYVVSKVF YQQQAANKGE 180 KTEEDLSEIA NAVVAKVDPV TPKSVTPDPP RAERRCQDFD LGKESTNVCT EPYAEHPGVE 240 NLEEANLQHE SPCYNDQPGM ENHVDQMVGD NDNCAEEGTK WWDSESQHLL DSQQLVEGLS 300 LCDEFLQSQS PSRGGHGTGA SGKSGLSDYA RLGPEHLKKD LEECQNLELD PANIELDTPP 360 EFRLSQLEFG SQDSFMAWGE GRVAD* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in shoot and root apical meristems, in lateral root primordia, in the vasculature of young leaves and in the root stele. {ECO:0000269|PubMed:23907539}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.008G116600.2 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002311435.1 | 0.0 | SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
Swissprot | Q6NQK2 | 1e-156 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | B9HIY7 | 0.0 | B9HIY7_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0008s11550.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25580.1 | 1e-157 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.008G116600.2 |
Entrez Gene | 7488338 |