PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.008G115800.2
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family TCP
Protein Properties Length: 406aa    MW: 45795.2 Da    PI: 9.1498
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.008G115800.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP151.55.5e-471172733135
                 TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..........ssssasec.eaesssssa 82 
                         ++kdrhskihT++g+RdRR+Rls+++ ++fFdLqd+LGfdk+sktieWL++++k+ ikelt++          +++ +s c ++es+++s+
  Potri.008G115800.2 117 TGKDRHSKIHTAQGPRDRRMRLSLQISRKFFDLQDMLGFDKASKTIEWLFTKSKAGIKELTDSvpggrrrcsiCADGKSVCsTPESEVVSG 207
                         68*************************************************************9999999888444444454444444444 PP

                 TCP  83 s...nsssg............kaaksaakskksqksaasalnlak.esrakarararertrekmriknk 135
                                 +            ++  s++k+k+s+k ++ + nl + +sr+karararertre+m+++  
  Potri.008G115800.2 208 IkltP---EtngdkrgtkaknDSLVSNPKEKRSKKVHKPVFNLVDrDSREKARARARERTRERMKNQGI 273
                         43330...12333444555556666777777777777777999888*******************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.2E-45117270IPR005333Transcription factor, TCP
PROSITE profilePS5136936.525118176IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137011.374250267IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MFSSSSSFNP FDQYANHTMI AGTENPSSIE SCSQTFLQHF PDPFLDVDDL LVGELLSQQQ  60
QEHQEEEEVL GSNTALAVEA HDPQTIPTAS NEETKINNKK KRSNVDTSKQ PIRQRRTGKD  120
RHSKIHTAQG PRDRRMRLSL QISRKFFDLQ DMLGFDKASK TIEWLFTKSK AGIKELTDSV  180
PGGRRRCSIC ADGKSVCSTP ESEVVSGIKL TPETNGDKRG TKAKNDSLVS NPKEKRSKKV  240
HKPVFNLVDR DSREKARARA RERTRERMKN QGIDTSSDRS SQANPNKLEK FESSGPLEYG  300
ENLAPVNQEM SSPLKVGDVK ESSNHDLLPH QMDYVSITGN FFWITNSPRS SSIFDFSESV  360
ALPGGTNCKD DIFLNGGRRK KRYIISFRDC KHFYLLDWYV SVFAF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1256268RARARERTRERMK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.008G115800.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1494810.0AC149481.1 Populus trichocarpa clone Pop1-16J18, complete sequence.
GenBankAC1495410.0AC149541.1 Populus trichocarpa clone Pop1-12C14, complete sequence.
GenBankAF3090920.0AF309092.1 Populus balsamifera subsp. trichocarpa teosinte-branched-like protein (TB1) gene, complete cds.
GenBankEF3969010.0EF396901.1 Populus trichocarpa teosinte-branched-like protein (TB1) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002312378.20.0transcription factor TCP12
TrEMBLA0A2K1ZFP10.0A0A2K1ZFP1_POPTR; Uncharacterized protein
STRINGPOPTR_0008s11470.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.12e-30TCP domain protein 12