PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Potri.008G115800.1 | ||||||||
Common Name | POPTR_0008s11470g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
||||||||
Family | TCP | ||||||||
Protein Properties | Length: 454aa MW: 50821.4 Da PI: 7.0522 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 151 | 7.7e-47 | 117 | 273 | 3 | 135 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..........ssssasec.eaesssssa 82 ++kdrhskihT++g+RdRR+Rls+++ ++fFdLqd+LGfdk+sktieWL++++k+ ikelt++ +++ +s c ++es+++s+ Potri.008G115800.1 117 TGKDRHSKIHTAQGPRDRRMRLSLQISRKFFDLQDMLGFDKASKTIEWLFTKSKAGIKELTDSvpggrrrcsiCADGKSVCsTPESEVVSG 207 68*************************************************************9999999888444444454444444444 PP TCP 83 s...nsssg............kaaksaakskksqksaasalnlak.esrakarararertrekmriknk 135 + ++ s++k+k+s+k ++ + nl + +sr+karararertre+m+++ Potri.008G115800.1 208 IkltP---EtngdkrgtkaknDSLVSNPKEKRSKKVHKPVFNLVDrDSREKARARARERTRERMKNQGI 273 43330...12333444555556666777777777777777999888*******************9976 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 4.2E-45 | 117 | 270 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 36.525 | 118 | 176 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 11.374 | 250 | 267 | IPR017888 | CYC/TB1, R domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 454 aa Download sequence Send to blast |
MFSSSSSFNP FDQYANHTMI AGTENPSSIE SCSQTFLQHF PDPFLDVDDL LVGELLSQQQ 60 QEHQEEEEVL GSNTALAVEA HDPQTIPTAS NEETKINNKK KRSNVDTSKQ PIRQRRTGKD 120 RHSKIHTAQG PRDRRMRLSL QISRKFFDLQ DMLGFDKASK TIEWLFTKSK AGIKELTDSV 180 PGGRRRCSIC ADGKSVCSTP ESEVVSGIKL TPETNGDKRG TKAKNDSLVS NPKEKRSKKV 240 HKPVFNLVDR DSREKARARA RERTRERMKN QGIDTSSDRS SQANPNKLEK FESSGPLEYG 300 ENLAPVNQEM SSPLKVGDVK ESSNHDLLPH QMDYVSITGN FFWITNSPRS SSIFDFSESV 360 ALPGGTNCKD EFPGFPFNSN MTNDRIQYKY NALTNMKLPP LNAHEESPNS IFVNMPNPND 420 QNSISILMTT TTNGNANQSS NSFFAEDNFD CLY* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 256 | 268 | RARARERTRERMK |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Potri.008G115800.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC149481 | 0.0 | AC149481.1 Populus trichocarpa clone Pop1-16J18, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002312378.2 | 0.0 | transcription factor TCP12 | ||||
TrEMBL | B9HIY2 | 0.0 | B9HIY2_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0008s11470.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1738 | 32 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G68800.1 | 5e-31 | TCP domain protein 12 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Potri.008G115800.1 |
Entrez Gene | 7483925 |