PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.008G113400.1 | ||||||||
Common Name | POPTR_0008s11260g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | bZIP | ||||||||
Protein Properties | Length: 201aa MW: 22928.7 Da PI: 7.0253 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 48.1 | 2.5e-15 | 84 | 142 | 5 | 63 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 +++rr+++NRe+ArrsR RK++ ++eL + v L +eN+ L+++l++ ++ +++ +e+ Potri.008G113400.1 84 RKQRRMISNRESARRSRMRKQKHLDELWTQVVRLRTENHNLIDKLNHVSECHDRVLQEN 142 79*********************************************999877777766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 3.1E-16 | 80 | 144 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.542 | 82 | 133 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 1.3E-12 | 84 | 156 | No hit | No description |
Pfam | PF00170 | 5.7E-13 | 84 | 142 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 3.56E-13 | 84 | 133 | No hit | No description |
CDD | cd14702 | 9.29E-20 | 85 | 136 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 87 | 102 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence Send to blast |
MLPGELTGIH YIAPDQSLIP FPANFGMMQQ SSIPAFHFNR LLNNLQSSSF PQPVREFTPQ 60 SSSLSNNSTS DESEEHQLSI IDERKQRRMI SNRESARRSR MRKQKHLDEL WTQVVRLRTE 120 NHNLIDKLNH VSECHDRVLQ ENARLKKEAS DLRQMITDLQ IGSPYTATAL RDLEEVPCNT 180 AHVRAESSNQ SVTSSVDLLH * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 96 | 103 | RRSRMRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.008G113400.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002311422.1 | 1e-147 | basic leucine zipper 43 | ||||
Swissprot | Q9FMC2 | 1e-37 | BZP43_ARATH; Basic leucine zipper 43 | ||||
TrEMBL | B9HIW1 | 1e-145 | B9HIW1_POPTR; BZIP family protein | ||||
STRING | POPTR_0008s11260.1 | 1e-146 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1604 | 33 | 99 | Representative plant | OGRP3104 | 11 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13600.1 | 7e-43 | basic leucine-zipper 58 |
Link Out ? help Back to Top | |
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Phytozome | Potri.008G113400.1 |
Entrez Gene | 7483915 |
Publications ? help Back to Top | |||
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