PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.008G112000.5 | ||||||||
Common Name | POPTR_0008s11120g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | bHLH | ||||||||
Protein Properties | Length: 328aa MW: 36187.2 Da PI: 6.3535 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 50.7 | 3.3e-16 | 49 | 98 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h+ E+rRR++iN++f+ Lr+l+P++ ++K + a+ L +++eY+++Lq Potri.008G112000.5 49 RSKHSVTEQRRRSKINERFQILRDLIPHS----DQKRDTASFLLEVIEYVQHLQ 98 899*************************9....8*******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 2.3E-22 | 45 | 119 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.14E-18 | 45 | 119 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.082 | 47 | 97 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.28E-15 | 49 | 102 | No hit | No description |
Pfam | PF00010 | 1.5E-13 | 49 | 98 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.0E-12 | 53 | 103 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 328 aa Download sequence Send to blast |
MRGKGNQNQV EEEYEEDEFG SRKDGPSSSF TVNNNNSNGK NSDRANAIRS KHSVTEQRRR 60 SKINERFQIL RDLIPHSDQK RDTASFLLEV IEYVQHLQEK VQKYEGPYQG WSPEPAKLMP 120 WRNSHWRLQS SVGHPQAIKN GYVPGETFPG KLDENNIALT PAMLPSTPNL VESDHVACKV 180 LEHQPELGNK AMPLPTPAPI RSVGLVAHPC QLPVSDAQSA ECPITSEMLN QQELAIEAGT 240 INISSVYSQE LLNTLTQSLQ SAGVDLSQAN ISVQIDLGKR ANRGLTSGTL TSKDPQNPHP 300 TNEMITHLRD ASGGEDSDQA QKRLKTS* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.9776 | 0.0 | leaf |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Positive brassinosteroid-signaling protein. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.008G112000.5 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024462941.1 | 0.0 | transcription factor BIM2 isoform X2 | ||||
Swissprot | Q9CAA4 | 1e-109 | BIM2_ARATH; Transcription factor BIM2 | ||||
TrEMBL | A0A2K1ZFH1 | 0.0 | A0A2K1ZFH1_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0008s11120.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69010.1 | 4e-99 | BES1-interacting Myc-like protein 2 |
Link Out ? help Back to Top | |
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Phytozome | Potri.008G112000.5 |
Entrez Gene | 7483907 |
Publications ? help Back to Top | |||
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