PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.008G103300.1 | ||||||||
Common Name | POPTR_0008s10280g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | WRKY | ||||||||
Protein Properties | Length: 369aa MW: 40893.6 Da PI: 7.6286 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 106.9 | 1e-33 | 215 | 273 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+s++prsYYrCtsagC vkk+vers++dp++v++tYeg+H h+ Potri.008G103300.1 215 LDDGYRWRKYGQKAVKNSPYPRSYYRCTSAGCGVKKRVERSSDDPSIVVTTYEGQHIHP 273 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.1E-35 | 200 | 275 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.31E-29 | 207 | 275 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 33.327 | 210 | 275 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.4E-40 | 215 | 274 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.5E-27 | 216 | 273 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 369 aa Download sequence Send to blast |
MNEMKQNHNI SIVRINSVEK REEKKELTRT ALKTENFNMA NSTFITPPPT SDIDHMPNVF 60 SLSTPPPPPT SSIFDMIPCD ITTGGDQKAG SLGFMDLLDI NQDFGASASL FEWFNQNPVV 120 GSPQQQQSFV PSPASTVPET SEVLNNPATP NSSASISSSS NEAGEDAFQQ VKAGDQEEEQ 180 DQDKNKKQLK PKKRSQKRLR EPRFAFMTKS EVDHLDDGYR WRKYGQKAVK NSPYPRSYYR 240 CTSAGCGVKK RVERSSDDPS IVVTTYEGQH IHPSPIIRGS IGIFADSSGF GAATSSFVFP 300 QPALYQQKHA SMYSSSPSLN FTSSTTRFSP SFSLQERRLG NPPSLLRDHG LLQDIVPSQM 360 IRKEAKEE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 1e-28 | 208 | 275 | 10 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 1e-28 | 208 | 275 | 10 | 77 | Probable WRKY transcription factor 4 |
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Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.14499 | 0.0 | bud |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.008G103300.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002312318.2 | 0.0 | probable WRKY transcription factor 48 isoform X1 | ||||
TrEMBL | B9HIL9 | 0.0 | B9HIL9_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0008s10280.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1002 | 34 | 114 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49520.1 | 9e-51 | WRKY DNA-binding protein 48 |
Link Out ? help Back to Top | |
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Phytozome | Potri.008G103300.1 |
Entrez Gene | 7485889 |