PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.008G103300.1
Common NamePOPTR_0008s10280g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 369aa    MW: 40893.6 Da    PI: 7.6286
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.008G103300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY106.91e-33215273159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         ldDgy+WrKYGqK vk+s++prsYYrCtsagC vkk+vers++dp++v++tYeg+H h+
  Potri.008G103300.1 215 LDDGYRWRKYGQKAVKNSPYPRSYYRCTSAGCGVKKRVERSSDDPSIVVTTYEGQHIHP 273
                         59********************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.1E-35200275IPR003657WRKY domain
SuperFamilySSF1182901.31E-29207275IPR003657WRKY domain
PROSITE profilePS5081133.327210275IPR003657WRKY domain
SMARTSM007741.4E-40215274IPR003657WRKY domain
PfamPF031063.5E-27216273IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MNEMKQNHNI SIVRINSVEK REEKKELTRT ALKTENFNMA NSTFITPPPT SDIDHMPNVF  60
SLSTPPPPPT SSIFDMIPCD ITTGGDQKAG SLGFMDLLDI NQDFGASASL FEWFNQNPVV  120
GSPQQQQSFV PSPASTVPET SEVLNNPATP NSSASISSSS NEAGEDAFQQ VKAGDQEEEQ  180
DQDKNKKQLK PKKRSQKRLR EPRFAFMTKS EVDHLDDGYR WRKYGQKAVK NSPYPRSYYR  240
CTSAGCGVKK RVERSSDDPS IVVTTYEGQH IHPSPIIRGS IGIFADSSGF GAATSSFVFP  300
QPALYQQKHA SMYSSSPSLN FTSSTTRFSP SFSLQERRLG NPPSLLRDHG LLQDIVPSQM  360
IRKEAKEE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-282082751077Probable WRKY transcription factor 4
2lex_A1e-282082751077Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.144990.0bud
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.008G103300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002312318.20.0probable WRKY transcription factor 48 isoform X1
TrEMBLB9HIL90.0B9HIL9_POPTR; Uncharacterized protein
STRINGPOPTR_0008s10280.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100234114
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49520.19e-51WRKY DNA-binding protein 48