PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Potri.008G098400.2 | ||||||||
Common Name | POPTR_0008s09790g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 242aa MW: 27637.2 Da PI: 8.1423 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 97.2 | 6.9e-31 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gkl+e++s Potri.008G098400.2 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNSGKLFEFCS 59 79***********************************************96 PP | |||||||
2 | K-box | 92.7 | 6.1e-31 | 82 | 173 | 9 | 100 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 ++e+++++ +qe+ kLk +++ Lqr+qR+llGedL++L eL qLe+qL++slk+iRs+K +++l++++elq+ke+ l e+n+aL++kle Potri.008G098400.2 82 QSEKETQNNYQEYLKLKTRVDVLQRSQRNLLGEDLGNLGTMELDQLENQLDSSLKQIRSRKGQFVLDELSELQRKEELLLETNNALKRKLE 172 68999************************************************************************************98 PP K-box 100 e 100 e Potri.008G098400.2 173 E 173 7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.3E-41 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 33.165 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.32E-43 | 2 | 78 | No hit | No description |
SuperFamily | SSF55455 | 3.14E-33 | 2 | 86 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.7E-32 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.4E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.7E-32 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.7E-32 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 8.6E-26 | 84 | 171 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 15.049 | 87 | 177 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 242 aa Download sequence Send to blast |
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN SGKLFEFCSS 60 SNMATTIEKY QRFSYGALEG GQSEKETQNN YQEYLKLKTR VDVLQRSQRN LLGEDLGNLG 120 TMELDQLENQ LDSSLKQIRS RKGQFVLDEL SELQRKEELL LETNNALKRK LEETSAAIRL 180 SWKVGEQRVP YSFQPVQPYD PIEPLQYNST FQFGYNPAET DQATVTSSSQ NVNGFIPGWM 240 L* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ox0_A | 1e-26 | 75 | 171 | 1 | 101 | Developmental protein SEPALLATA 3 |
4ox0_B | 1e-26 | 75 | 171 | 1 | 101 | Developmental protein SEPALLATA 3 |
4ox0_C | 1e-26 | 75 | 171 | 1 | 101 | Developmental protein SEPALLATA 3 |
4ox0_D | 1e-26 | 75 | 171 | 1 | 101 | Developmental protein SEPALLATA 3 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in flowers and seeds. {ECO:0000269|Ref.1}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Potri.008G098400.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EU121637 | 0.0 | EU121637.2 Populus deltoides clone F049-A07 MADS-box protein (MADS1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024462686.1 | 1e-177 | MADS-box protein CMB1 | ||||
Swissprot | Q8LLR2 | 1e-111 | MADS2_VITVI; Agamous-like MADS-box protein MADS2 | ||||
TrEMBL | A0A2K1ZEQ1 | 1e-176 | A0A2K1ZEQ1_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0008s09790.1 | 1e-127 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G15800.1 | 9e-95 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Potri.008G098400.2 |
Entrez Gene | 7498222 |
Publications ? help Back to Top | |||
---|---|---|---|
|