PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.008G098400.1
Common NamePOPTR_0008s09790g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MIKC_MADS
Protein Properties Length: 243aa    MW: 27765.4 Da    PI: 8.1423
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.008G098400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF97.27e-31959151
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gkl+e++s
  Potri.008G098400.1  9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNSGKLFEFCS 59
                        79***********************************************96 PP
2K-box91.71.3e-30771743100
               K-box   3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenka 93 
                         + +g + e++++++ +qe+ kLk +++ Lqr+qR+llGedL++L   eL qLe+qL++slk+iRs+K +++l++++elq+ke+ l e+n+a
  Potri.008G098400.1  77 ALEGGQSEKETQQNNYQEYLKLKTRVDVLQRSQRNLLGEDLGNLGTMELDQLENQLDSSLKQIRSRKGQFVLDELSELQRKEELLLETNNA 167
                         566677889999******************************************************************************* PP

               K-box  94 Lrkklee 100
                         L++klee
  Potri.008G098400.1 168 LKRKLEE 174
                         ****987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.3E-41160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.165161IPR002100Transcription factor, MADS-box
CDDcd002651.32E-43278No hitNo description
SuperFamilySSF554552.35E-33289IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-32323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003192.4E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-322338IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-323859IPR002100Transcription factor, MADS-box
PfamPF014865.3E-2683172IPR002487Transcription factor, K-box
PROSITE profilePS5129715.19788178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN SGKLFEFCSS  60
SNMATTIEKY QRFSYGALEG GQSEKETQQN NYQEYLKLKT RVDVLQRSQR NLLGEDLGNL  120
GTMELDQLEN QLDSSLKQIR SRKGQFVLDE LSELQRKEEL LLETNNALKR KLEETSAAIR  180
LSWKVGEQRV PYSFQPVQPY DPIEPLQYNS TFQFGYNPAE TDQATVTSSS QNVNGFIPGW  240
ML*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A8e-27751721101Developmental protein SEPALLATA 3
4ox0_B8e-27751721101Developmental protein SEPALLATA 3
4ox0_C8e-27751721101Developmental protein SEPALLATA 3
4ox0_D8e-27751721101Developmental protein SEPALLATA 3
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers and seeds. {ECO:0000269|Ref.1}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.008G098400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU1216370.0EU121637.2 Populus deltoides clone F049-A07 MADS-box protein (MADS1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024462686.11e-175MADS-box protein CMB1
SwissprotQ8LLR21e-112MADS2_VITVI; Agamous-like MADS-box protein MADS2
TrEMBLA0A2K1ZEQ11e-174A0A2K1ZEQ1_POPTR; Uncharacterized protein
STRINGPOPTR_0008s09790.11e-126(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22932178
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15800.15e-94MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]