PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.008G091900.1 | ||||||||
Common Name | POPTR_0008s09140g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | WRKY | ||||||||
Protein Properties | Length: 493aa MW: 54144 Da PI: 8.7199 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 109.7 | 1.4e-34 | 222 | 278 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 dDgynWrKYGqK+vkgsefprsYY+Ct+++Cpvkkkvers d++v+ei+Y+g+Hnhe Potri.008G091900.1 222 DDGYNWRKYGQKQVKGSEFPRSYYKCTHPNCPVKKKVERSL-DGQVTEIIYKGQHNHE 278 8****************************************.***************8 PP | |||||||
2 | WRKY | 105 | 3.9e-33 | 390 | 448 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k+ver+a dp++v++ Yeg+Hnh+ Potri.008G091900.1 390 LDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCKVRKHVERAAADPRAVITAYEGKHNHD 448 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.3E-30 | 213 | 280 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 24.03 | 216 | 280 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 7.98E-27 | 219 | 280 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.4E-38 | 221 | 279 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.6E-26 | 222 | 278 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 2.5E-36 | 375 | 450 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.92E-29 | 382 | 450 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 37.619 | 385 | 450 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.3E-38 | 390 | 449 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.5E-25 | 391 | 448 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 493 aa Download sequence Send to blast |
MADEKEHQQP KQQQPSSRPI TITLPPRSFT ETFLSSGPPG SMGFSPGPMT LLSGFFSDSD 60 DCKSFSQLLA GATASPNFKP TDDKSSAGDF SRPGNLSIVP PSPMFTMPLG LCPVALPDSP 120 GFELFSPEGF GMIHQQALAQ VTAQAAQANS NMHVQQEYST SAMSSTQFLT SINNSAAQQQ 180 QQQQMAGSVT DSRVTVQELS GIPHADRIRS ESSSLAVDKP TDDGYNWRKY GQKQVKGSEF 240 PRSYYKCTHP NCPVKKKVER SLDGQVTEII YKGQHNHEPP QPNKRGKEGI NGNSNSQGNF 300 EMATLQSGYV RKTRDRKDQE SSQATPEHVS GMSDSEEVSD TETGGRIDED EPGHKRRITT 360 EVRVTEPASS HRTVTESRIV VQTTSEVDLL DDGYRWRKYG QKVVKGNPYP RSYYKCTTPG 420 CKVRKHVERA AADPRAVITA YEGKHNHDVP AAKNSSHITV NSNASQLKPQ TLEKRASNNS 480 NNQQPIARLR LK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 1e-42 | 222 | 451 | 8 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 1e-42 | 222 | 451 | 8 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 310 | 317 | RKTRDRKD |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: In young, mature and senescent leaves. {ECO:0000269|PubMed:11722756}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.008G091900.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002312267.1 | 0.0 | probable WRKY transcription factor 3 | ||||
Swissprot | Q9ZQ70 | 1e-163 | WRKY3_ARATH; Probable WRKY transcription factor 3 | ||||
TrEMBL | B9HIB5 | 0.0 | B9HIB5_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0008s09140.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1545 | 34 | 100 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03340.1 | 1e-139 | WRKY DNA-binding protein 3 |
Link Out ? help Back to Top | |
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Phytozome | Potri.008G091900.1 |
Entrez Gene | 7460715 |
Publications ? help Back to Top | |||
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