PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.008G091300.1
Common NamePOPTR_0008s09080g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 392aa    MW: 44020.4 Da    PI: 4.4634
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.008G091300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.86.3e-194291255
                 AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        +y GVr+++ +grWvAeI+d      ++ r++lg+++taeeAa+a+++a+  l+g
  Potri.008G091300.1 42 RYLGVRQRP-SGRWVAEIKDtI----QKIRVWLGTYDTAEEAARAYDEAACLLRG 91
                        799******.7*********33....35**********************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.72E-314198No hitNo description
PfamPF008472.0E-134291IPR001471AP2/ERF domain
PROSITE profilePS5103219.8624299IPR001471AP2/ERF domain
SuperFamilySSF541712.42E-194299IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.5E-274298IPR001471AP2/ERF domain
SMARTSM003801.2E-3542105IPR001471AP2/ERF domain
PRINTSPR003672.4E-84354IPR001471AP2/ERF domain
PRINTSPR003672.4E-86581IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MARKRKAGEG EEERVSNDGN VGWDQMMEEA ESLHGVRRAR KRYLGVRQRP SGRWVAEIKD  60
TIQKIRVWLG TYDTAEEAAR AYDEAACLLR GANTRTNFWP CSPSSHSKPA LPPKIVNLLL  120
LRIKARHNSL TQTTTFPVNQ QEQEAREQEN QFDPFFEMPG DISIVENSDT ANSTADTMTI  180
SDHTSGFFES RYITEDHGST STFEVDDSWS NVDGSGQGGQ EEGRGEEEID MGLIDFQFDD  240
ALGSSFYHSP FDIAQEMMEP MEQEHHGDEP PMIREIMKRW KHERKFSASL YAYNGVSECL  300
RLAFRPGMPA VANGGYELPS NLGINSNNNE EEKKRDDMGK DAKEEVQEEV EIPQTPTEKG  360
SSSSSSSLSK EDGELSLWSS LDLPPICFNN I*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-133598771Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.008G091300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002311323.10.0ethylene-responsive transcription factor RAP2-11
TrEMBLB9HIA90.0B9HIA9_POPTR; Uncharacterized protein
STRINGPOPTR_0008s09080.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33383267
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.13e-18related to AP2 11