PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.008G088000.1
Common NamePOPTR_0008s08760g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 449aa    MW: 49617.2 Da    PI: 7.5185
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.008G088000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.54.7e-16138183147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         rg W + Ed +l+++v+++G+ +W++Ia+++  gR++k+c++rw++ 
  Potri.008G088000.1 138 RGHWRPAEDTQLKKLVALYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 183
                         899*****************************.***********996 PP
2Myb_DNA-binding57.92.3e-18190233146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         r+++T+eE+e+l +a++++G++ W+ Iar ++ gRt++ +k++w+ 
  Potri.008G088000.1 190 RKAFTEEEEERLMQAHRLYGNK-WAMIARLFP-GRTDNAVKNHWHV 233
                         789*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.039133184IPR017930Myb domain
SMARTSM007174.2E-14137186IPR001005SANT/Myb domain
SuperFamilySSF466897.86E-28138231IPR009057Homeodomain-like
PfamPF002491.4E-15138183IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-25139191IPR009057Homeodomain-like
CDDcd001675.09E-13141182No hitNo description
PROSITE profilePS5129426.919185239IPR017930Myb domain
SMARTSM007174.7E-15189237IPR001005SANT/Myb domain
PfamPF002493.4E-15190232IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.1E-21192238IPR009057Homeodomain-like
CDDcd001675.31E-12192232No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MARTLLHMQR QIITAEINGL ACYYSTSPSS STSSPCSSMG MIDRDIGSLC PKSGMTPPTS  60
SFHEMENGRF TWGFPFMGNY HANSDTAVEV RVSDSSDGFG ENNETVNHEA NSSNEENPDE  120
NMMSGKETES GQSKLCTRGH WRPAEDTQLK KLVALYGPQN WNLIAEKLEG RSGKSCRLRW  180
FNQLDPRINR KAFTEEEEER LMQAHRLYGN KWAMIARLFP GRTDNAVKNH WHVIMARKYR  240
EQSSAYRRRR LSQSVNRRTE ETPSFVGRDA GMKTVQPPYC PSISSAGGLN KLSPCQIGNF  300
NGAGRGGVDY GLNGSPHMTS GGEAVSSIKV PQSGFCAQQT PFDFFSGPKS NDMMGMFSQT  360
ISWDRPNNEP RISGFYPQQH PSYILTMQQS NHQYPYCFSD STASTLPQAV SASEPSCSSP  420
SVADQSRVSG HSETVPPPFI DFLGVGAT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A6e-341382384104MYB PROTO-ONCOGENE PROTEIN
1mse_C5e-341382384104C-Myb DNA-Binding Domain
1msf_C5e-341382384104C-Myb DNA-Binding Domain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1245250YRRRRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.008G088000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002312252.10.0transcription factor CSA
TrEMBLB9HI820.0B9HI82_POPTR; Uncharacterized protein
STRINGPOPTR_0008s08760.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23034243
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.11e-72myb domain protein 105