PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.008G087600.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | G2-like | ||||||||
Protein Properties | Length: 323aa MW: 36023.5 Da PI: 6.7424 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 104.6 | 5.9e-33 | 17 | 71 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wt+eLH+rFveav+qLGG++kAtPk+++++m+++gLtl+h+kSHLQkYRl Potri.008G087600.1 17 KPRLKWTQELHQRFVEAVNQLGGADKATPKSLMRVMGIPGLTLYHLKSHLQKYRL 71 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.399 | 14 | 74 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.1E-31 | 15 | 73 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.02E-17 | 16 | 72 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.6E-23 | 17 | 72 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 7.0E-9 | 19 | 70 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 1.6E-23 | 123 | 170 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 323 aa Download sequence Send to blast |
MGLQHQSMNL VLSTDAKPRL KWTQELHQRF VEAVNQLGGA DKATPKSLMR VMGIPGLTLY 60 HLKSHLQKYR LGKSQQSLFS IESEQEDDKE IQSSDDHFKE SAVTRSSRGI CSDGNHHPIN 120 ESFQIAQALQ MQMEVQRKLH EQIEVQRHLQ LRIEAQGKYL QTVLKKAQET LAGYNSSSMG 180 IELAKAELCR LVSMVNSGCP SSSISELTET GGSILKDIER TQMRNTVCSM ESSLTSSESS 240 GRKEDMQKEN EIHDTNKSNT AFVELPLMDI HPQENLLDND SSNQGKKRSG SIISDGVSVE 300 QPLARRLKNG DQLRLGTFDL NS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 1e-19 | 16 | 73 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 1e-19 | 16 | 73 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 1e-19 | 17 | 73 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 1e-19 | 17 | 73 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 1e-19 | 17 | 73 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 1e-19 | 17 | 73 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 1e-19 | 16 | 73 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 1e-19 | 16 | 73 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 1e-19 | 16 | 73 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 1e-19 | 16 | 73 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 1e-19 | 16 | 73 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 1e-19 | 16 | 73 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.008G087600.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU230611 | 0.0 | CU230611.1 Populus EST from mild drought-stressed leaves. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024461762.1 | 0.0 | myb family transcription factor PHL8 | ||||
Swissprot | F4I274 | 4e-92 | PHL8_ARATH; Myb family transcription factor PHL8 | ||||
TrEMBL | A0A2K1ZE56 | 0.0 | A0A2K1ZE56_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0010s17510.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5218 | 32 | 53 | Representative plant | OGRP78 | 17 | 262 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69580.1 | 1e-92 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.008G087600.1 |
Publications ? help Back to Top | |||
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