PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.008G081600.1
Common NamePOPTR_0008s08110g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 278aa    MW: 31444.8 Da    PI: 8.3245
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.008G081600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding591e-181360148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        rg W++eEde+lv++++ +G g+W+++++  g++R++k+c++rw +yl
  Potri.008G081600.1 13 RGLWSPEEDEKLVKYITSHGHGSWSSVPKFAGLKRCGKSCRLRWINYL 60
                        788*******************************************97 PP
2Myb_DNA-binding55.51.3e-1766109146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         rg++++eE+++++d+++ lG++ W+ Ia++++ gRt++++k++w++
  Potri.008G081600.1  66 RGSFSAEEEQIIIDVHRILGNR-WAQIAKHLP-GRTDNEVKNFWNS 109
                         899*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.7E-26563IPR009057Homeodomain-like
PROSITE profilePS5129419.129860IPR017930Myb domain
SuperFamilySSF466895.24E-3010107IPR009057Homeodomain-like
SMARTSM007175.1E-141262IPR001005SANT/Myb domain
PfamPF002492.2E-161360IPR001005SANT/Myb domain
CDDcd001676.61E-121660No hitNo description
PROSITE profilePS5129426.47161115IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.6E-2664115IPR009057Homeodomain-like
SMARTSM007171.5E-1665113IPR001005SANT/Myb domain
PfamPF002496.7E-1666109IPR001005SANT/Myb domain
CDDcd001678.92E-1368108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MGHRCCNKQK VKRGLWSPEE DEKLVKYITS HGHGSWSSVP KFAGLKRCGK SCRLRWINYL  60
RPELKRGSFS AEEEQIIIDV HRILGNRWAQ IAKHLPGRTD NEVKNFWNSC IKKKLMAQGL  120
DPKTHNLIPS HQRAANKVAC NISQSNQQPF SIITLDSKMK DYSMEINPPI LTLPSPYPSN  180
CSTQPPLLQT TTSLPLPTSS YQTPTKVFEV MQSQDQENQP NKICDAQIMD NTKGVHDNMD  240
ASFDTTSYDL EFVDSTILLP GSMCRDLSSM DDLAWNF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-31131157108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00350DAPTransfer from AT3G12720Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.008G081600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1826601e-122AC182660.2 Populus trichocarpa clone Pop1-125N19, complete sequence.
GenBankAC1878611e-122AC187861.2 Populus trichocarpa clone Pop1-1A4, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024462561.11e-176transcription factor MYB86
TrEMBLA0A3N7FG291e-175A0A3N7FG29_POPTR; Uncharacterized protein
STRINGPOPTR_0008s08110.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF34663267
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.17e-89myb domain protein 67