PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.008G081500.2
Common NamePOPTR_0008s08100g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 280aa    MW: 31692.5 Da    PI: 5.0926
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.008G081500.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1028.3e-3227257128
                 NAM  57 ewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                         ewyf+s+rdkky++g+r+nrat++gyWkatgkd++v s +++  g+kktLv+y+grap+g +t+Wvmheyrl
  Potri.008G081500.2   2 EWYFYSPRDKKYPNGSRTNRATRAGYWKATGKDRPVQS-QKRPAGMKKTLVYYRGRAPHGIRTNWVMHEYRL 72 
                         8************************************9.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100539.329196IPR003441NAC domain
SuperFamilySSF1019412.62E-37296IPR003441NAC domain
PfamPF023657.8E-15372IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MEWYFYSPRD KKYPNGSRTN RATRAGYWKA TGKDRPVQSQ KRPAGMKKTL VYYRGRAPHG  60
IRTNWVMHEY RLIDSFCGNA SSILKDSYAL CRVFRKTVQT PKTKEEKNVG DEERDIAAWV  120
SEEQLLGDNK CRIEISKGRE AEGENFNNDY CKFPSETSSS DVTQGTPIET ATADDLLAPI  180
ASDEANSSAN IYSVGVDFSS NLIQDMQMPV YSSLLYQFPY PSLELEDFPQ INIAECVKPS  240
KPEISDEYMM YKDCMDGTLE QLCSSQDNSN TVLPHARLI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A1e-3329675168NAC domain-containing protein 19
3swm_B1e-3329675168NAC domain-containing protein 19
3swm_C1e-3329675168NAC domain-containing protein 19
3swm_D1e-3329675168NAC domain-containing protein 19
3swp_A1e-3329675168NAC domain-containing protein 19
3swp_B1e-3329675168NAC domain-containing protein 19
3swp_C1e-3329675168NAC domain-containing protein 19
3swp_D1e-3329675168NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00205DAPTransfer from AT1G54330Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.008G081500.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1878613e-92AC187861.2 Populus trichocarpa clone Pop1-1A4, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002311281.10.0NAC domain-containing protein 71
TrEMBLB9HI290.0B9HI29_POPTR; Uncharacterized protein
STRINGPOPTR_0008s08100.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54330.12e-62NAC domain containing protein 20