PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.008G081500.1
Common NamePOPTR_0008s08100g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 341aa    MW: 38793.6 Da    PI: 4.8169
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.008G081500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM179.39.8e-5661331128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                         lppGfrFhPtdeelv +yL +k++g+++el e+i+evd+yk+ePwdLp k  + +++ ewyf+s+rdkky++g+r+nrat++gyWkatgkd
  Potri.008G081500.1   6 LPPGFRFHPTDEELVAYYLDRKINGHTIEL-EIIPEVDLYKCEPWDLPdKsFLPSKDMEWYFYSPRDKKYPNGSRTNRATRAGYWKATGKD 95 
                         79****************************.99**************96435566888********************************* PP

                 NAM  90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                         ++v s +++  g+kktLv+y+grap+g +t+Wvmheyrl
  Potri.008G081500.1  96 RPVQS-QKRPAGMKKTLVYYRGRAPHGIRTNWVMHEYRL 133
                         ****9.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.29E-643157IPR003441NAC domain
PROSITE profilePS5100559.8016157IPR003441NAC domain
PfamPF023651.3E-287133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MAPMSLPPGF RFHPTDEELV AYYLDRKING HTIELEIIPE VDLYKCEPWD LPDKSFLPSK  60
DMEWYFYSPR DKKYPNGSRT NRATRAGYWK ATGKDRPVQS QKRPAGMKKT LVYYRGRAPH  120
GIRTNWVMHE YRLIDSFCGN ASSILKDSYA LCRVFRKTVQ TPKTKEEKNV GDEERDIAAW  180
VSEEQLLGDN KCRIEISKGR EAEGENFNND YCKFPSETSS SDVTQGTPIE TATADDLLAP  240
IASDEANSSA NIYSVGVDFS SNLIQDMQMP VYSSLLYQFP YPSLELEDFP QINIAECVKP  300
SKPEISDEYM MYKDCMDGTL EQLCSSQDNS NTVLPHARLI *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-58115712165NO APICAL MERISTEM PROTEIN
1ut4_B4e-58115712165NO APICAL MERISTEM PROTEIN
1ut7_A4e-58115712165NO APICAL MERISTEM PROTEIN
1ut7_B4e-58115712165NO APICAL MERISTEM PROTEIN
3swm_A4e-58115715168NAC domain-containing protein 19
3swm_B4e-58115715168NAC domain-containing protein 19
3swm_C4e-58115715168NAC domain-containing protein 19
3swm_D4e-58115715168NAC domain-containing protein 19
3swp_A4e-58115715168NAC domain-containing protein 19
3swp_B4e-58115715168NAC domain-containing protein 19
3swp_C4e-58115715168NAC domain-containing protein 19
3swp_D4e-58115715168NAC domain-containing protein 19
4dul_A4e-58115712165NAC domain-containing protein 19
4dul_B4e-58115712165NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00205DAPTransfer from AT1G54330Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.008G081500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1878611e-100AC187861.2 Populus trichocarpa clone Pop1-1A4, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002311281.10.0NAC domain-containing protein 71
TrEMBLB9HI290.0B9HI29_POPTR; Uncharacterized protein
STRINGPOPTR_0008s08100.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105083341
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54330.11e-109NAC domain containing protein 20