PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.008G080300.2
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C3H
Protein Properties Length: 337aa    MW: 36623.5 Da    PI: 8.6671
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.008G080300.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.21e-113258127
                        --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                        ++ + C++f++t  CkyG +CkF+H++
  Potri.008G080300.2 32 PGVPDCPYFLKTQRCKYGLNCKFNHPK 58
                        5789*********************96 PP
2zf-CCCH41.32.5e-1380104327
                         S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                         +++C f+++tG+Ck+G++CkF+H++
  Potri.008G080300.2  80 EPPCAFYMKTGICKFGATCKFHHPK 104
                         79*********************96 PP
3zf-CCCH39.41e-12158184127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         ++++ C+f+++tG CkyG++C+++H++
  Potri.008G080300.2 158 PGEVDCPFYLKTGSCKYGATCRYNHPE 184
                         57899********************96 PP
4zf-CCCH421.5e-13240265126
                         --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                         +++++C+f+++tG+Ck+G++CkF+H+
  Potri.008G080300.2 240 PGQAECDFYMKTGECKFGETCKFHHP 265
                         5789*********************8 PP
5zf-CCCH40.44.8e-13297318627
                         -SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   6 CrffartGtCkyGdrCkFaHgp 27 
                         C+++++tGtCkyG++CkF H+p
  Potri.008G080300.2 297 CPYYMKTGTCKYGATCKFDHPP 318
                         ********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003565.9E-63158IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.7653159IPR000571Zinc finger, CCCH-type
PfamPF006423.1E-93358IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.1E-53661IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.1E-53758IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.44177105IPR000571Zinc finger, CCCH-type
SMARTSM003569.3E-777104IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-680105IPR000571Zinc finger, CCCH-type
PfamPF006428.4E-1180104IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-582103IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.554157185IPR000571Zinc finger, CCCH-type
SMARTSM003563.9E-7157184IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-10159184IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.26E-5161185IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.6E-5163184IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.206239267IPR000571Zinc finger, CCCH-type
SMARTSM003569.9E-7239266IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-6240268IPR000571Zinc finger, CCCH-type
PfamPF006424.9E-11241265IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.3E-5245265IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-6291318IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.666291319IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-6295318IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.7E-6297316IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-10297318IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0061158Biological Process3'-UTR-mediated mRNA destabilization
GO:0005829Cellular Componentcytosol
GO:0003730Molecular FunctionmRNA 3'-UTR binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MLLLLLIRLF LALNALLKVP PIATSETFPD RPGVPDCPYF LKTQRCKYGL NCKFNHPKEK  60
MSLGVSENTS ISALPERPSE PPCAFYMKTG ICKFGATCKF HHPKDIQISL AGQGNDDGVQ  120
TNSVVDNGGI TGDVNVIKAL VSVTPALLHN SKGLPMRPGE VDCPFYLKTG SCKYGATCRY  180
NHPERTAINP PAAAIGHPII APSMANLNLG VFSPAASIYQ TIDPRLSTLG VGPTVYPQRP  240
GQAECDFYMK TGECKFGETC KFHHPIDRSA PTAKQTEPQT VKLTLAGLPR REGAVHCPYY  300
MKTGTCKYGA TCKFDHPPPG EVMVFPNLKE LLMQKQ*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in inflorescences, at intermediate levels in leaves and stems and at lower levels in roots. {ECO:0000269|PubMed:11595801}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.008G080300.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2320645e-85CU232064.1 Populus EST from mild drought-stressed leaves.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024463159.10.0zinc finger CCCH domain-containing protein 37 isoform X1
SwissprotQ941Q31e-135C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLA0A2K1ZDR60.0A0A2K1ZDR6_POPTR; Uncharacterized protein
TrEMBLA0A2K1ZDR70.0A0A2K1ZDR7_POPTR; Uncharacterized protein
STRINGPOPTR_0008s07980.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-131floral homeotic protein (HUA1)