PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.008G080300.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C3H
Protein Properties Length: 512aa    MW: 55447 Da    PI: 8.2547
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.008G080300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.33.9e-11156180226
                         -S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                         +++ C +++ t tCk+Gd+CkF H+
  Potri.008G080300.1 156 GEKDCAYYMLTRTCKFGDTCKFDHP 180
                         7889********************9 PP
2zf-CCCH35.41.8e-11207233127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         ++ + C++f++t  CkyG +CkF+H++
  Potri.008G080300.1 207 PGVPDCPYFLKTQRCKYGLNCKFNHPK 233
                         5789*********************96 PP
3zf-CCCH40.64.2e-13255279327
                         S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                         +++C f+++tG+Ck+G++CkF+H++
  Potri.008G080300.1 255 EPPCAFYMKTGICKFGATCKFHHPK 279
                         79*********************96 PP
4zf-CCCH38.71.7e-12333359127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         ++++ C+f+++tG CkyG++C+++H++
  Potri.008G080300.1 333 PGEVDCPFYLKTGSCKYGATCRYNHPE 359
                         57899********************96 PP
5zf-CCCH41.32.6e-13415440126
                         --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                         +++++C+f+++tG+Ck+G++CkF+H+
  Potri.008G080300.1 415 PGQAECDFYMKTGECKFGETCKFHHP 440
                         5789*********************8 PP
6zf-CCCH39.78e-13472493627
                         -SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   6 CrffartGtCkyGdrCkFaHgp 27 
                         C+++++tGtCkyG++CkF H+p
  Potri.008G080300.1 472 CPYYMKTGTCKYGATCKFDHPP 493
                         ********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003563.6E-4154181IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.896154182IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-5155181IPR000571Zinc finger, CCCH-type
PfamPF006426.7E-9156180IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.1E-4160179IPR000571Zinc finger, CCCH-type
SMARTSM003565.9E-6206233IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.765206234IPR000571Zinc finger, CCCH-type
PfamPF006425.3E-9208233IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-5211236IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-4212233IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.441252280IPR000571Zinc finger, CCCH-type
SMARTSM003569.3E-7252279IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-10255279IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.84E-6256279IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.5E-5257278IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.554332360IPR000571Zinc finger, CCCH-type
SMARTSM003563.9E-7332359IPR000571Zinc finger, CCCH-type
PfamPF006424.9E-10334359IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-5336360IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-4338359IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.206414442IPR000571Zinc finger, CCCH-type
SMARTSM003569.9E-7414441IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-6415443IPR000571Zinc finger, CCCH-type
PfamPF006428.2E-11416440IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.9E-5420440IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.666466494IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-6466493IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.8E-6470493IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-5472491IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-10472493IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0061158Biological Process3'-UTR-mediated mRNA destabilization
GO:0005829Cellular Componentcytosol
GO:0003730Molecular FunctionmRNA 3'-UTR binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 512 aa     Download sequence    Send to blast
MAKQLYGYGA PATTSASRSR TDSYLTDSVL TRYLGTGSDP LSSDSSKYSA SSSMYLTQSD  60
SALRYSVDRG IASAAAAATS PHLSSWPPPP GVDAPSAVDS LVPGLKRTPE VLYHPTLLGA  120
HSTIGQSEDW YSTNALAKRA RFETTSHLPI YPQRPGEKDC AYYMLTRTCK FGDTCKFDHP  180
VWVPEGGIPD WKEVPPIATS ETFPDRPGVP DCPYFLKTQR CKYGLNCKFN HPKEKMSLGV  240
SENTSISALP ERPSEPPCAF YMKTGICKFG ATCKFHHPKD IQISLAGQGN DDGVQTNSVV  300
DNGGITGDVN VIKALVSVTP ALLHNSKGLP MRPGEVDCPF YLKTGSCKYG ATCRYNHPER  360
TAINPPAAAI GHPIIAPSMA NLNLGVFSPA ASIYQTIDPR LSTLGVGPTV YPQRPGQAEC  420
DFYMKTGECK FGETCKFHHP IDRSAPTAKQ TEPQTVKLTL AGLPRREGAV HCPYYMKTGT  480
CKYGATCKFD HPPPGEVMVF PNLKELLMQK Q*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in inflorescences, at intermediate levels in leaves and stems and at lower levels in roots. {ECO:0000269|PubMed:11595801}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.008G080300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2320648e-85CU232064.1 Populus EST from mild drought-stressed leaves.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024463159.10.0zinc finger CCCH domain-containing protein 37 isoform X1
SwissprotQ941Q30.0C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLA0A2K1ZDR60.0A0A2K1ZDR6_POPTR; Uncharacterized protein
STRINGPOPTR_0008s07980.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF75583345
Representative plantOGRP67541519
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.10.0floral homeotic protein (HUA1)