PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.008G073600.1
Common NamePOPTR_0008s07360g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 288aa    MW: 31578.7 Da    PI: 4.9505
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.008G073600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.85.4e-1878128155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         + y+GVr++  +g+WvAeIr+p   + r  r +lg+f ta+eAa a+++a+++++g
  Potri.008G073600.1  78 CNYRGVRQRT-WGKWVAEIREP---N-RgPRLWLGTFPTAYEAALAYDNAARAMYG 128
                         56*****999.**********8...2.35************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.22E-3078138No hitNo description
PfamPF008472.0E-1278128IPR001471AP2/ERF domain
PROSITE profilePS5103221.11479136IPR001471AP2/ERF domain
SuperFamilySSF541715.75E-2079136IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.0E-3079137IPR001471AP2/ERF domain
SMARTSM003801.7E-3579142IPR001471AP2/ERF domain
PRINTSPR003671.4E-98091IPR001471AP2/ERF domain
PRINTSPR003671.4E-9102118IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0010286Biological Processheat acclimation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MGTLIQGSNA TSMSMDSTKK RKRASDKSVA ETLQKWKEYN EHLDAQGDGG NKPVRKVPAK  60
GSKKGCMKGK GGPENSVCNY RGVRQRTWGK WVAEIREPNR GPRLWLGTFP TAYEAALAYD  120
NAARAMYGSC ARLNIPEVVN STSSSKDNFS AVTPSYYSSA ASPADSVTTS THSEVCAYED  180
PNQNVLSQAE DWMTNISSQA EVCEQNVSSQ AEVYEQNVSS QHIEDCSRGV EKNSKLSQDE  240
LKIQSENPSW TNDWHSYGWD EIFSVEELLG DIDSGMTGAE GYFSLGF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-1879141568ATERF1
3gcc_A4e-1879141568ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00302DAPTransfer from AT2G40340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.008G073600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1514540.0EF151454.1 Populus trichocarpa DRE-binding protein 2 (DREB2) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024461868.10.0dehydration-responsive element-binding protein 2C
RefseqXP_024461869.10.0dehydration-responsive element-binding protein 2C
TrEMBLB9HHV60.0B9HHV6_POPTR; Uncharacterized protein
STRINGPOPTR_0008s07360.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117534106
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40340.16e-37ERF family protein