PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.008G071700.2
Common NamePOPTR_0008s07170g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family G2-like
Protein Properties Length: 330aa    MW: 36307.5 Da    PI: 6.9029
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.008G071700.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like99.42.5e-3169122255
             G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                         prlrWtp+LH +Fv+ave+LGG+++AtPk +l++m++k+L ++hvkSHLQ+YR+
  Potri.008G071700.2  69 PRLRWTPDLHLCFVHAVERLGGQDRATPKLVLQMMNIKDLNIAHVKSHLQMYRS 122
                         8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.3E-3065124IPR009057Homeodomain-like
PROSITE profilePS5129410.48965125IPR017930Myb domain
SuperFamilySSF466891.45E-1467124IPR009057Homeodomain-like
TIGRFAMsTIGR015574.4E-2269123IPR006447Myb domain, plants
PfamPF002496.2E-870121IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MKGSDSFEGS KSSYSDKKVG QDEGDEEEVD GISFKSKNEG QSTSNSSIEE NKKKAADGSF  60
RQYIRSKMPR LRWTPDLHLC FVHAVERLGG QDRATPKLVL QMMNIKDLNI AHVKSHLQMY  120
RSKRSDDPGQ DASWRGHDHM MCRAYMGGTA LNRVKHGLYG SVIGCNNHNS LNYGSSVHIP  180
SLNGKATGRT HQSLEAVELF QVSRQNESTP SSMESDFITK LQERSGMLDQ VDFLNTSSSA  240
DKNWRTIQEM QKGLKRKTLD PDCNLDLNLS LKLASKDDDE LEKCVEGCEV DGSLSLSLSS  300
SSSSKLGGSM EGDGSGKHAR MASTLDLTL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A3e-1770124357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-1770124357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-1770124357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-1770124357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.008G071700.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024462567.10.0uncharacterized protein LOC7472443
TrEMBLB9HHT80.0B9HHT8_POPTR; Uncharacterized protein
STRINGPOPTR_0008s07170.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.12e-40G2-like family protein