PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.008G069400.1
Common NamePOPTR_0008s06940g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C3H
Protein Properties Length: 680aa    MW: 73881.5 Da    PI: 7.689
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.008G069400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.64.4e-08266286526
                         --SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                         +C+ f++ GtC+ Gd+C +aHg
  Potri.008G069400.1 266 PCPEFRK-GTCQKGDSCEYAHG 286
                         8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.203.9E-1558180IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.51E-1369157IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500888.54976100IPR002110Ankyrin repeat
PfamPF127967.6E-976145IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029713.60276151IPR020683Ankyrin repeat-containing domain
SMARTSM002487.4E-476106IPR002110Ankyrin repeat
CDDcd002042.38E-1378174No hitNo description
PROSITE profilePS500889.217111146IPR002110Ankyrin repeat
SMARTSM002480.036111143IPR002110Ankyrin repeat
PROSITE profilePS5010313.666261288IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-5261287IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-5266286IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.1E-5266288IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.869296320IPR000571Zinc finger, CCCH-type
SMARTSM0035637296319IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0050832Biological Processdefense response to fungus
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 680 aa     Download sequence    Send to blast
MCKGSKGDSF SSNPIMEDKS YSKKDNFLHE CSVLLELSAS DDLAGFKIEV EQKGLDIDGA  60
NYWYAKRIGS KKMGFEERTP LMIAAMFGST HVLKYIIETG KVNVNRVCGS DKVTALHCAV  120
AGCAASSVGI VKLLLDASAD PNSADANGNK PGDLFSTSSK CMCNSRKKLI ELLLKGQNLS  180
EDEEEKLIIM PQLAKEGTEK KEYPLDVTLP DINNGIYGTD EFRMYSFKVK PCSRAYSHDW  240
TECPFVHPGE NARRRDPMKY PYSCVPCPEF RKGTCQKGDS CEYAHGVFES WLHPAQYRTR  300
LCKDETGCAR KVCFFAHKPE ELRPVYASTG SAMPSPRSNS SAVDMTTLSP LALGSSPLPL  360
PATSTPPMSP LAVASSSPKS GGLWQNKVSQ TPPALQLPGS RLKTAFCARD LNLEMELLGL  420
ESYSSQLQQQ QQQLRDEMSC LSSPSHWSNR IADLKPTNRD DVFGSLDSSL MSPLQGVSLN  480
ASAQSQLQSP NGMQIRQNMN QLRSSYPAAS LSSSPARNPI SYGFDTSAAV AAAVMNSRSS  540
AFAKRSQSFI DRGAVPNRLG FTAAANTISM MPSNLPDWGS PNGKLDWGIQ GDELNKLKKS  600
ASFGFRSNNN PAATTAANVT ASHVGEPDVS WVNSLVKDAP PAGSTFFGAE KQYSLGKGVR  660
ESLPPWMEQI YIEQEQMVA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.89060.0bud| leaf| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots and anthers. {ECO:0000269|PubMed:17609218}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269|PubMed:17609218}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.008G069400.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress. {ECO:0000269|PubMed:17609218}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006379630.10.0zinc finger CCCH domain-containing protein 29
SwissprotQ9XEE60.0C3H29_ARATH; Zinc finger CCCH domain-containing protein 29
TrEMBLU5G7L70.0U5G7L7_POPTR; Uncharacterized protein
STRINGPOPTR_0008s06940.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17963490
Representative plantOGRP7091569
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40140.20.0C3H family protein