PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.008G064200.1 | ||||||||
Common Name | POPTR_0008s06450g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | MYB | ||||||||
Protein Properties | Length: 293aa MW: 33006.2 Da PI: 8.6353 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26 | 2.2e-08 | 21 | 67 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 WT+eE + + +a + + + +W ++a++++ g+t ++++ + k+ Potri.008G064200.1 21 EWTKEENKMFERALAIFDEHepdRWLKVAAMIP-GKTVNDVIKQYKKL 67 7**************99999999**********.*********99986 PP | |||||||
2 | Myb_DNA-binding | 42.6 | 1.4e-13 | 121 | 165 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ +++ + ++G+g+W+ I+r + +t+ q+ s+ qky Potri.008G064200.1 121 PWTEEEHRRFLMGLLKHGKGDWRNISRNFVGSKTPTQVASHAQKY 165 8****************************999************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 7.795 | 17 | 70 | IPR017884 | SANT domain |
SMART | SM00717 | 9.1E-9 | 18 | 70 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.27E-11 | 20 | 74 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.8E-4 | 20 | 66 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.9E-7 | 21 | 67 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.87E-9 | 21 | 67 | No hit | No description |
PROSITE profile | PS51294 | 19.173 | 114 | 170 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.46E-17 | 115 | 170 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 7.6E-17 | 117 | 169 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 1.7E-10 | 118 | 164 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.4E-11 | 118 | 168 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.37E-9 | 121 | 166 | No hit | No description |
Pfam | PF00249 | 7.2E-11 | 121 | 165 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 293 aa Download sequence Send to blast |
METLYSSWSM SNPICVAQTT EWTKEENKMF ERALAIFDEH EPDRWLKVAA MIPGKTVNDV 60 IKQYKKLEED VCDIEAGRVP VPGYLSSSFT SELVDDSTFD AYRKRPLNIK SADQQRKKGV 120 PWTEEEHRRF LMGLLKHGKG DWRNISRNFV GSKTPTQVAS HAQKYFIRQQ LSGVKDKRRP 180 SIHDITTLNL AGSTSPSDGD KASSLDQSDV LLPQQKPAGM QKLLVDWDES KDGSVMTFGS 240 THGDLFESSP YEISSNGLTF QGQNLYAGAR HGARIKPRNL VFQLSPPRFQ IH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 1e-14 | 22 | 87 | 11 | 76 | RADIALIS |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Detected in the apical inflorescence meristem, in bract primordia arising in its periphery and in floral meristems produced in the axils of bracts (stages 0-3). From stage 3 to stage 8, detected in all floral organs irrespective of their dorsoventral positions. From stage 9, barely detectable in bracts, sepals, and stamens. In the corolla, however, expression was maintained and enhanced in some regions. Within ventral and lateral petals at stage 9, asymmetric pattern of expression with high levels of transcripts in the inner epidermis of the furrow and very reduced levels in the remaining cell layers. In the dorsal petals, from stage 9 onward, detected but with a more even distribution across cell layers than in the ventral petal. {ECO:0000269|PubMed:11937495}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00489 | DAP | Transfer from AT5G05790 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.008G064200.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002311203.3 | 0.0 | transcription factor DIVARICATA | ||||
Swissprot | Q8S9H7 | 1e-91 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | A0A2K1ZCT6 | 0.0 | A0A2K1ZCT6_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0008s06450.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF466 | 34 | 162 | Representative plant | OGRP275 | 17 | 122 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G05790.1 | 2e-90 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.008G064200.1 |
Entrez Gene | 7494474 |
Publications ? help Back to Top | |||
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