PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.008G062700.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 413aa    MW: 44610.6 Da    PI: 5.8307
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.008G062700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.81.1e-175398147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                        +g+W++eEd  l ++v ++G ++W++Iar ++ gR++k+c++rw + 
  Potri.008G062700.1 53 KGPWSPEEDAVLSQLVSKFGARNWSLIARGIP-GRSGKSCRLRWCNQ 98
                        79******************************.***********985 PP
2Myb_DNA-binding61.61.6e-19105149147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         r+++T+eEd +++ a++++G++ W++Iar ++ gRt++++k++w++ 
  Potri.008G062700.1 105 RKPFTEEEDRIIIAAHAKHGNK-WAAIARLLP-GRTDNSIKNHWNST 149
                         789*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.88748103IPR017930Myb domain
SuperFamilySSF466896.11E-3250146IPR009057Homeodomain-like
SMARTSM007173.2E-1552101IPR001005SANT/Myb domain
PfamPF002497.6E-175398IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.5E-2654106IPR009057Homeodomain-like
CDDcd001671.42E-145597No hitNo description
PROSITE profilePS5129422.418104154IPR017930Myb domain
SMARTSM007173.4E-18104152IPR001005SANT/Myb domain
PfamPF002493.0E-17105149IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-24107153IPR009057Homeodomain-like
CDDcd001671.57E-14107150No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MQNQTENNND AMRITEGDRE NQTNSPTGGD GGAESGELGG GIGGNGRTNG KVKGPWSPEE  60
DAVLSQLVSK FGARNWSLIA RGIPGRSGKS CRLRWCNQLD PCLTRKPFTE EEDRIIIAAH  120
AKHGNKWAAI ARLLPGRTDN SIKNHWNSTL RRRWADLIRL KPGTSDVMED GSIEITRASS  180
EETLSVCDIS SSQPPEVRDV TIDDQPSQHE DKAQTDTIPQ TNEVTVATEP HGNPTLPRPE  240
ARVSAFKVYN PPSGLKMSSG LTRTLPTHGP SVQTPKPDLG SCKFLEDVHC EPIIPSRCGY  300
GCCATPSGGH PPSSLLGPEF VEYEEPPPFS SQELISIATD LNNIAWMKSG LENSSTGIPS  360
NAASYRMSQG TPVDSQMGMS EQNLRNGHMH FEEGRSRLMG TMAGTISTQM PA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C1e-38521533104C-Myb DNA-Binding Domain
1msf_C1e-38521533104C-Myb DNA-Binding Domain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.008G062700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU2784560.0GU278456.1 Populus balsamifera isolate WHR03 haplotype A myb family transcription factor 109 gene, partial sequence.
GenBankGU2784590.0GU278459.1 Populus balsamifera isolate STL13 haplotype B myb family transcription factor 109 gene, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024462232.10.0transcription factor MYB1
TrEMBLA0A2K1ZCQ70.0A0A2K1ZCQ7_POPTR; Uncharacterized protein
STRINGcassava4.1_008330m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39863362
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55730.12e-96myb domain protein 109