PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.008G059000.1
Common NamePOPTR_0008s05930g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 305aa    MW: 33725.6 Da    PI: 7.1772
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.008G059000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.000185577123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        y+C+ C++ F++   L  H+++H
  Potri.008G059000.1 55 YSCSFCKREFRSAQALGGHMNVH 77
                        99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.22E-65282No hitNo description
PROSITE profilePS5015711.245582IPR007087Zinc finger, C2H2
SMARTSM003550.0065577IPR015880Zinc finger, C2H2-like
PfamPF139125.3E-65578IPR007087Zinc finger, C2H2
PROSITE patternPS0002805777IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MEQAQYWLWM KRKQLLMSQL EAATDSNSKC SLEEKAFAED ASGHLGGCIW PPRSYSCSFC  60
KREFRSAQAL GGHMNVHRRD RARLKQSLTL SPHKDVFRHQ NHIQRSLKSL GSHFPTEVCN  120
LDNYDLDPKL SVSGTINIAS TLSTSRFSAL STHENLSDHA FVSPFSSYFE QEQHKGYPHF  180
HNNLSGSDHS LAVRLLNDSE SKPEAEKNQG KLDSTCSRHD NFVATDLFMG LSSAPNSQSL  240
SSPDSCGNEA ISCKGPTTNV SVLSLLVKPR SNYGCTQSEA IGPMSSSMED IDLELRLGEP  300
PKVK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A3e-135077229superman protein
2l1o_A3e-135077229Transcriptional regulator SUPERMAN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.008G059000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4445463e-43AM444546.2 Vitis vinifera contig VV78X197403.26, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002311181.10.0uncharacterized protein LOC7487976
TrEMBLB9HML00.0B9HML0_POPTR; Uncharacterized protein
STRINGPOPTR_0008s05930.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17763078
Representative plantOGRP5761581
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06070.11e-25C2H2 family protein