PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.008G045300.4
Common NamePOPTR_0008s04490g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family AP2
Protein Properties Length: 491aa    MW: 54288.8 Da    PI: 7.5435
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.008G045300.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.27.6e-17168217155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Potri.008G045300.4 168 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHTAARAYDRAAIKFRG 217
                         78*******************......55************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.4E-9168217IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-16168226IPR016177DNA-binding domain
CDDcd000181.77E-23169227No hitNo description
SMARTSM003803.5E-32169231IPR001471AP2/ERF domain
PROSITE profilePS5103217.556169225IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.0E-17169226IPR001471AP2/ERF domain
CDDcd000188.86E-12260305No hitNo description
SuperFamilySSF541714.71E-6260304IPR016177DNA-binding domain
SMARTSM003805.7E-11261309IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MLDLNLGITY SDSSCDDNNK NGMMVIVDVE NHHHQEEEEA SRTRQMEDSA ASNSSTINTT  60
EDENSSNNSN SAFIFDILKK DENFTSTTTI DASKQTNPNC DFTTQQLSPQ RSGLEFNLQP  120
GLAGTTATRP QWLKLSQMGS SGEAELRIVQ QKQQQARKSR RGPRSRSSQY RGVTFYRRTG  180
RWESHIWDCG KQVYLGGFDT AHTAARAYDR AAIKFRGVDA DINFNLSDYE EDMKQMKNLN  240
KEEFVHILRR QSTGFSRGSS KYRGVTLHKC GRWEARMGQF LGKKAYDKAA LNCNGREAVT  300
NFEPSVYKGD TVFDTNYGGS GHNLDLSLGI SQPTNDPKGN DNLGDGHCSF GGCEIPIKER  360
QAAEGTAAAR MGLETLHGLP IASRNLPTWS GMFPGLASSY EERTPEKRFE AVSPPRFSSW  420
PWQINGSNSV AATMPQLCVA ASSGFSSSTK TVPSATLPFN QQNHFANNNP RLAAFTTSAT  480
NPSFYYSYTS *
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.008G045300.4
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024463450.10.0ethylene-responsive transcription factor RAP2-7 isoform X3
SwissprotQ9SK037e-93RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLA0A2K1ZBR60.0A0A2K1ZBR6_POPTR; Uncharacterized protein
STRINGPOPTR_0008s04490.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.12e-84related to AP2.7