PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.008G045300.3 | ||||||||
Common Name | POPTR_0008s04490g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | AP2 | ||||||||
Protein Properties | Length: 492aa MW: 54417 Da PI: 7.7935 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.2 | 7.6e-17 | 168 | 217 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g Potri.008G045300.3 168 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHTAARAYDRAAIKFRG 217 78*******************......55************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 7.4E-9 | 168 | 217 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 8.5E-16 | 168 | 226 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.78E-23 | 169 | 227 | No hit | No description |
SMART | SM00380 | 3.5E-32 | 169 | 231 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.556 | 169 | 225 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.0E-17 | 169 | 226 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.71E-6 | 260 | 304 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 8.89E-12 | 260 | 305 | No hit | No description |
SMART | SM00380 | 5.7E-11 | 261 | 309 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 492 aa Download sequence Send to blast |
MLDLNLGITY SDSSCDDNNK NGMMVIVDVE NHHHQEEEEA SRTRQMEDSA ASNSSTINTT 60 EDENSSNNSN SAFIFDILKK DENFTSTTTI DASKQTNPNC DFTTQQLSPQ RSGLEFNLQP 120 GLAGTTATRP QWLKLSQMGS SGEAELRIVQ QKQQQARKSR RGPRSRSSQY RGVTFYRRTG 180 RWESHIWDCG KQVYLGGFDT AHTAARAYDR AAIKFRGVDA DINFNLSDYE EDMKQMKNLN 240 KEEFVHILRR QSTGFSRGSS KYRGVTLHKC GRWEARMGQF LGKKAYDKAA LNCNGREAVT 300 NFEPSVYKGD TVFDTNYGGS GHNLDLSLGI SQPTNDPKGN DNLGDGHCSF GGCEIPIKER 360 QAKAEGTAAA RMGLETLHGL PIASRNLPTW SGMFPGLASS YEERTPEKRF EAVSPPRFSS 420 WPWQINGSNS VAATMPQLCV AASSGFSSST KTVPSATLPF NQQNHFANNN PRLAAFTTSA 480 TNPSFYYSYT S* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.008G045300.3 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024463450.1 | 0.0 | ethylene-responsive transcription factor RAP2-7 isoform X3 | ||||
Swissprot | Q9SK03 | 7e-92 | RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7 | ||||
TrEMBL | A0A2K1ZBQ2 | 0.0 | A0A2K1ZBQ2_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0008s04490.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28550.1 | 1e-83 | related to AP2.7 |
Link Out ? help Back to Top | |
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Phytozome | Potri.008G045300.3 |
Entrez Gene | 7469774 |