PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.008G039000.1
Common NamePOPTR_0008s03890g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ARF
Protein Properties Length: 709aa    MW: 78310.2 Da    PI: 7.1112
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.008G039000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.75.2e-24152253199
                         EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                         f k+lt+sd+++ g +++p+ +ae++        +++ +  t+  +d +g++W++++iyr++++r++lt+GW++Fv++++L +gD++vF  
  Potri.008G039000.1 152 FAKTLTQSDANNGGGFSVPRYCAETIfprldytAEPPVQ--TILAKDVHGETWKFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGDSIVFL- 239
                         89****************************986555555..8999*********************************************. PP

                         -SSSEE..EEEEE-S CS
                  B3  85 dgrsefelvvkvfrk 99 
                          + +++ l+v+++r+
  Potri.008G039000.1 240 -RAENGDLCVGIRRA 253
                         .4488999****997 PP
2Auxin_resp114.69.1e-38305388183
          Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                         aa+ a+++++FevvY+Prast+eF+v+++ v++a+++++++G Rfkmafetedss++++ +Gt+++v+ +dp+rWpnS+Wr+L+
  Potri.008G039000.1 305 AASLAANGQPFEVVYYPRASTPEFCVRASAVRTAMHIQWCPGIRFKMAFETEDSSRISWfMGTISSVQFADPIRWPNSPWRLLQ 388
                         68899*****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-37145256IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.89E-30145255IPR015300DNA-binding pseudobarrel domain
CDDcd100173.15E-22151252No hitNo description
SMARTSM010199.4E-23152254IPR003340B3 DNA binding domain
PROSITE profilePS5086313.38152254IPR003340B3 DNA binding domain
PfamPF023624.0E-22152253IPR003340B3 DNA binding domain
PfamPF065077.9E-33305388IPR010525Auxin response factor
PROSITE profilePS5174517.734622702IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 709 aa     Download sequence    Send to blast
MFEAKLRDGY TQVLQIPKLH SGPMIREFQV MNPPKEQMRV AEKCLDSQLW HACAGSMVQM  60
PAVNSKVFYF PQGHAEHAQG SVDFGHFQIP ALIPCKVSAI KYMAEPETDE VYAKIRLTPS  120
SNSDLMFGDG CGEDSDDRLP NGIESQEKPA SFAKTLTQSD ANNGGGFSVP RYCAETIFPR  180
LDYTAEPPVQ TILAKDVHGE TWKFRHIYRG TPRRHLLTTG WSNFVNQKKL VAGDSIVFLR  240
AENGDLCVGI RRAKRGIGGG NECSSGWNSF GGYSGFLRED ESKLTRRNGN GDMKGKVKPE  300
SVIEAASLAA NGQPFEVVYY PRASTPEFCV RASAVRTAMH IQWCPGIRFK MAFETEDSSR  360
ISWFMGTISS VQFADPIRWP NSPWRLLQVA WDEPDLLQNV KRVSPWLAEL VSNMPAIHLS  420
PFSPPRKKLR LPQPPDFPLL GQIPMPSFTG IPLRSNSPLC CVSDNIPAGI QGARHAQFEL  480
SSSDLHFNKL QSGLFPVDFQ RRDHAASPSR ISSGNFMGNT KKSENISCLL TMGNSSQSLK  540
ESSETKTPHF VLFGQLIVTD QQSSQSCSGD TNANSSSDGN LGKASSDGSG SALQQNGPME  600
NSSDERSTWY KDHQKTDLGL ETDHCKVFLE SEDIGRTLDL SVLGSYEELH RKLASMFGIE  660
SSEMLSNVLY RDAAGATKHA GDEPFSEFLK TARRLTILSY ASRDNFGR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A6e-782440933388Auxin response factor 5
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.008G039000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002311089.20.0auxin response factor 18
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLB9HLK70.0B9HLK7_POPTR; Auxin response factor
STRINGPOPTR_0008s03890.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63734138
Representative plantOGRP5261578
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]