PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.008G032300.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 304aa    MW: 33750.1 Da    PI: 7.9513
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.008G032300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.30.001126148123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         y+C+ C+++F++   L  H  +H
  Potri.008G032300.1 126 YECKTCSRTFPSFQALGGHRASH 148
                         99**********99999998887 PP
2zf-C2H213.90.00017203225123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C+ Cg +F++   L  H+r+H
  Potri.008G032300.1 203 HECSVCGAVFTSGQALGGHMRRH 225
                         78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139124.2E-13125150IPR007087Zinc finger, C2H2
SuperFamilySSF576671.09E-7125148No hitNo description
PROSITE profilePS5015710.575126153IPR007087Zinc finger, C2H2
SMARTSM003550.11126148IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280128148IPR007087Zinc finger, C2H2
SuperFamilySSF576671.09E-7198225No hitNo description
Gene3DG3DSA:3.30.160.602.0E-4201227IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139123.0E-13203227IPR007087Zinc finger, C2H2
SMARTSM003550.0062203225IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.284203227IPR007087Zinc finger, C2H2
PROSITE patternPS000280205225IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MEASEEVTTR VAKGKRTKRL RVQSATPFGL TTDSSSGDGG TNWSPTTSID EFQDSTEEEE  60
DMANCLILLA KGHSRDFPKQ QQHHHHRDHD HDHDSRGGVY TAKFNSRKFL ETANSTGSGR  120
VGYYVYECKT CSRTFPSFQA LGGHRASHKK PKAIHNDEKK QNLSISSDEE DGHYKNVSSL  180
SLQLSENNTN RGTYSNHNKG KIHECSVCGA VFTSGQALGG HMRRHRGPLV SSTTTLSLTP  240
MTIESEEPKR ARNVLSLDLD LNLPAPEDDK FAFASKQQQK QQQQKQQNTS LVFTSPALVD  300
CHY*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00487DAPTransfer from AT5G04390Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.008G032300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002311984.30.0zinc finger protein ZAT5
TrEMBLA0A2K1ZAW80.0A0A2K1ZAW8_POPTR; Uncharacterized protein
STRINGPOPTR_0010s23610.11e-158(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58634141
Representative plantOGRP23501035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.19e-65C2H2 family protein