PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.008G027000.2
Common NamePOPTR_0008s02730g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family Trihelix
Protein Properties Length: 468aa    MW: 50525.5 Da    PI: 8.3655
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.008G027000.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix58.81.4e-1881164186
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergf..erspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                         +W++  + +L+ea++e+ ++l+rg+l++ +Weev+++++erg   ++s +qCk+k++nl+kryk + ++ ++  s   s++ +f+++e
  Potri.008G027000.2  81 EWSDAAISCLLEAYTEKYNQLNRGNLRGRDWEEVAEAVSERGGsnKKSVEQCKNKIDNLKKRYKVELQRISG--S--GSSWHWFKHIE 164
                         5*************************************777654577*****************98888776..3..456*****998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.9E-2479166No hitNo description
Gene3DG3DSA:3.40.1160.108.6E-71220460IPR001048Aspartate/glutamate/uridylate kinase
HamapMF_01220_B32.359222461IPR015963Uridylate kinase, bacteria
SuperFamilySSF536332.09E-56223460IPR001048Aspartate/glutamate/uridylate kinase
CDDcd042548.71E-110225461No hitNo description
PfamPF006962.1E-23226440IPR001048Aspartate/glutamate/uridylate kinase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006221Biological Processpyrimidine nucleotide biosynthetic process
GO:0046939Biological Processnucleotide phosphorylation
GO:0005737Cellular Componentcytoplasm
GO:0033862Molecular FunctionUMP kinase activity
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MATDDFPLID EPPPHPPTRH PYSVTTTGDY YYSDHDKSAA TPSSKRNQQN HYYNNNKRSK  60
SNSITEIESC DYRDYRKDRE EWSDAAISCL LEAYTEKYNQ LNRGNLRGRD WEEVAEAVSE  120
RGGSNKKSVE QCKNKIDNLK KRYKVELQRI SGSGSSWHWF KHIEAIMGNA CNGKSGGGGE  180
SDGGGGGGSG GNVNAAVKQV KRYTSGSAAF ANTLKTKPVP NLKWRRVVFK ISGSALAGNC  240
QNIDPKVAMQ IAREVATASR GGLEIAIVLG GRNFFCGDSW ISATGLERPT AYQISMMATV  300
MNSILLQSAL EKHGVQARVQ SAFAMPELAE PYSRQRAIRH LEKGRVVIFG GAGAGAGAGA  360
GNPLFTTDTA AALRASEINA DALLKGTTNV DGVYDNHAGN SNAILDHISF REVVSRGVTS  420
MDMMAITYCE ENGIPVVIFN LLEPGNISRA LCGDQVGTLI DQAGRIS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3nwy_A3e-6322446050279Uridylate kinase
3nwy_B3e-6322446050279Uridylate kinase
3nwy_C3e-6322446050279Uridylate kinase
3nwy_D3e-6322446050279Uridylate kinase
3nwy_E3e-6322446050279Uridylate kinase
3nwy_F3e-6322446050279Uridylate kinase
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.008G027000.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002311975.30.0uncharacterized protein LOC7494905
SwissprotQ3AV984e-72PYRH_SYNS9; Uridylate kinase
SwissprotQ7U5F55e-72PYRH_SYNPX; Uridylate kinase
TrEMBLA0A2K1ZAN60.0A0A2K1ZAN6_POPTR; Uncharacterized protein
STRINGPOPTR_0008s02730.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.11e-158Trihelix family protein