PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.008G027000.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family Trihelix
Protein Properties Length: 500aa    MW: 54134.9 Da    PI: 8.0905
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.008G027000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix58.61.6e-1881164186
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergf..erspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                         +W++  + +L+ea++e+ ++l+rg+l++ +Weev+++++erg   ++s +qCk+k++nl+kryk + ++ ++  s   s++ +f+++e
  Potri.008G027000.1  81 EWSDAAISCLLEAYTEKYNQLNRGNLRGRDWEEVAEAVSERGGsnKKSVEQCKNKIDNLKKRYKVELQRISG--S--GSSWHWFKHIE 164
                         5*************************************777654577*****************98888776..3..456*****998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.3E-2479166No hitNo description
Gene3DG3DSA:3.40.1160.103.8E-42220377IPR001048Aspartate/glutamate/uridylate kinase
SuperFamilySSF536333.67E-30222377IPR001048Aspartate/glutamate/uridylate kinase
CDDcd042542.15E-102225493No hitNo description
PfamPF006962.0E-10226377IPR001048Aspartate/glutamate/uridylate kinase
Gene3DG3DSA:3.40.1160.106.2E-20410492IPR001048Aspartate/glutamate/uridylate kinase
SuperFamilySSF536331.22E-18410492IPR001048Aspartate/glutamate/uridylate kinase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006221Biological Processpyrimidine nucleotide biosynthetic process
GO:0046939Biological Processnucleotide phosphorylation
GO:0005737Cellular Componentcytoplasm
GO:0033862Molecular FunctionUMP kinase activity
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MATDDFPLID EPPPHPPTRH PYSVTTTGDY YYSDHDKSAA TPSSKRNQQN HYYNNNKRSK  60
SNSITEIESC DYRDYRKDRE EWSDAAISCL LEAYTEKYNQ LNRGNLRGRD WEEVAEAVSE  120
RGGSNKKSVE QCKNKIDNLK KRYKVELQRI SGSGSSWHWF KHIEAIMGNA CNGKSGGGGE  180
SDGGGGGGSG GNVNAAVKQV KRYTSGSAAF ANTLKTKPVP NLKWRRVVFK ISGSALAGNC  240
QNIDPKVAMQ IAREVATASR GGLEIAIVLG GRNFFCGDSW ISATGLERPT AYQISMMATV  300
MNSILLQSAL EKHGVQARVQ SAFAMPELAE PYSRQRAIRH LEKGRVVIFG GAGAGAGAGA  360
GNPLFTTDTA AALRASESIP LLLAFIISCV LLFTGNLDAC FFYNVFWLSV NADALLKGTT  420
NVDGVYDNHA GNSNAILDHI SFREVVSRGV TSMDMMAITY CEENGIPVVI FNLLEPGNIS  480
RALCGDQVGT LIDQAGRIS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3nwy_A2e-5622449250279Uridylate kinase
3nwy_B2e-5622449250279Uridylate kinase
3nwy_C2e-5622449250279Uridylate kinase
3nwy_D2e-5622449250279Uridylate kinase
3nwy_E2e-5622449250279Uridylate kinase
3nwy_F2e-5622449250279Uridylate kinase
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.008G027000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002311975.30.0uncharacterized protein LOC7494905
TrEMBLA0A1I9W0C80.0A0A1I9W0C8_POPTO; Aspartate/glutamate/uridylate kinase family protein
STRINGPOPTR_0008s02730.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40623252
Representative plantOGRP61611218
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.11e-151Trihelix family protein