PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.007G138300.1
Common NamePOPTR_0007s01080g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C3H
Protein Properties Length: 384aa    MW: 43296.7 Da    PI: 7.3832
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.007G138300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.87.6e-08124145426
                         ---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                         + C+ f r G C++G++C FaHg
  Potri.007G138300.1 124 AVCPEFIR-GGCNRGENCEFAHG 145
                         78******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902299.73E-5119149IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-5120146IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.887121147IPR000571Zinc finger, CCCH-type
PfamPF006424.7E-5124145IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.5E-5125147IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.484155179IPR000571Zinc finger, CCCH-type
SMARTSM003561.6155178IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MGTISAEQHK LFPSHQILSP HKPLIRDLEI PPRKLLTRKT HQETLDVSPY ETDLQEFLPY  60
NDSNNEIDID DELDPYSSDH FRMYEFKVRR CTRSRSHDWT DCPFAHPGEK ARRRDLRRFH  120
YSGAVCPEFI RGGCNRGENC EFAHGVFECW LHPFRYRTEA CKDGKNCKRK VCFFAHSPRQ  180
LRILPEGSSH NKTLGSSPCS SLNHGHCCCA VCHSMTSSPT STLLGMSPLS PPLSPSLTPS  240
LSPVKHQSLS RFSPISRYSE TLSKFRAGVV SYKDVFTELM SSLEAMNFNE AAGVSSPMSL  300
YPNHKRNVNN TPRNIDVSFD GEDQPQFILS PSTPTPSSSF FNRDCSSNKG LFIDDIHKIN  360
DHNNGGLACT PDPDLGWVNE LLM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.007G138300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002309749.30.0zinc finger CCCH domain-containing protein 2
TrEMBLA0A2K1ZU290.0A0A2K1ZU29_POPTR; Uncharacterized protein
STRINGPOPTR_0007s01080.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62612644
Representative plantOGRP11701644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03790.12e-74C3H family protein