PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.007G138100.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 286aa    MW: 31985.2 Da    PI: 10.0567
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.007G138100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.42e-19102152256
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                         +y+GVr ++ +gr++AeIrdp   gk+ r++lg+f+ta eAa+a+++a+++++g+
  Potri.007G138100.1 102 HYRGVRKRP-WGRYAAEIRDP---GKKSRVWLGTFDTAVEAARAYDKAAREYRGA 152
                         69*******.**********8...557**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.2E-34102165IPR001471AP2/ERF domain
CDDcd000181.82E-29102161No hitNo description
PfamPF008478.4E-13102151IPR001471AP2/ERF domain
PROSITE profilePS5103223.169102159IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-31102159IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-22102160IPR016177DNA-binding domain
PRINTSPR003671.7E-10103114IPR001471AP2/ERF domain
PRINTSPR003671.7E-10125141IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MAATRLFVDR YSGTRQAEEW TRVHILMVAH RPPDPNLHFI FSGDYFLSSV YLRHWLLYCN  60
LRYILRLFSS LGFKKMAPKK LNGNDNGSLK KASGDHDKKE IHYRGVRKRP WGRYAAEIRD  120
PGKKSRVWLG TFDTAVEAAR AYDKAAREYR GAKAKTNFPI AEKVVDYDDE KQSSSQSSTV  180
ESSSSPVVSA VARDVTRQVG GVVGTGRFPF VFQQQPPHVN AVGPVWFLDS TVKPEFVAQR  240
FPVRYDPVGL EGGAHSDSDS SSVIDFKPRS SILHLDLNLP PPADA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-2099160264ATERF1
3gcc_A3e-2099160264ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.126560.0bud| leaf
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00623PBMTransfer from PK19363.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.007G138100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002310408.21e-151ethylene-responsive transcription factor 4
TrEMBLA0A3N7FDB11e-150A0A3N7FDB1_POPTR; Uncharacterized protein
STRINGPOPTR_0007s01110.11e-150(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33034189
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.18e-42erf domain protein 9