PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.007G135500.1

Common Name

POPTR_0007s01330g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

HB-other

Protein Properties

Length: 1779aa MW: 199729 Da PI: 5.3737

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.007G135500.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.4	2.5e-18	27	83	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++kR +++qle+Le+ + + yps+++r+eL+ +lgL++rq ++WF+ rR k++k Potri.007G135500.1 27 KSKRKMKSASQLEILEKTYSVDTYPSEAARAELSVQLGLSDRQLQMWFCHRRLKDRK 83 67999**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.4E-17	13	83	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.54E-15	22	83	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.714	24	84	IPR001356	Homeobox domain
SMART	SM00389	8.4E-16	26	88	IPR001356	Homeobox domain
CDD	cd00086	1.78E-13	27	83	No hit	No description
Pfam	PF00046	7.9E-16	27	83	IPR001356	Homeobox domain
PROSITE profile	PS50827	17.048	555	614	IPR018501	DDT domain
SMART	SM00571	5.5E-23	555	614	IPR018501	DDT domain
Pfam	PF02791	1.1E-17	556	611	IPR018501	DDT domain
Pfam	PF05066	7.5E-15	737	804	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	1.2E-8	952	992	IPR028942	WHIM1 domain
Pfam	PF15613	3.3E-13	1134	1206	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1779 aa Download sequence Send to blast
MEEAGGGGGV EVEAKKKTPG EGEGESKSKR KMKSASQLEI LEKTYSVDTY PSEAARAELS 60 VQLGLSDRQL QMWFCHRRLK DRKAPLVKRP RKESPSPAGM PGGGEMGVVA EVGNEHGSGS 120 SPFVLGVDPR RAVGRPTGVA VPRISADVQA MKRYYEPQQS IAELRAVAFV EAQLGEPLRE 180 DGPILGMEFD PLPPDAFGAP IATTGQQKQS VRIEANLYER PDVKPIKSTT RTLHEYQFLP 240 QQPTVRAEAY ERAAPSCQYG SPADVHNVKT ESISATLPFM HANKQVSSGY DLSNQVPSLS 300 LMPQESRQGH LLPSTTGEYE TVIQKCSFTN IGMDAQSGAH LVTALDNPYM SSDRRVTHDE 360 DALRMQRKRK SEEARIAREV EAHEKRIRKE LEKQDILRRK REEQMRKEME KHDRERRKEE 420 ERLLREKQRE VERYQREQKR ELERREKFLQ KESIRVEKMR QKEELRREKE AARQKAATER 480 AIARRMAKES MELIDDERLE LMEMAASSKG LPSIIPLDFE TLQNLDLFRD KLTEFPPKSV 540 LLKRPFLIQP WNDSEENVGN LLMVWRFLIT FADVLGIWPF TLDEFVQAFH DYDSRLLSEV 600 HVALLKSIIK DIEDVARTPA TGLGPNQNGA ANPGGGHPQI VEGAYAWGFD LRSWQRHLNP 660 LTWPEILRQF GLSAGFGPQM KKRNVDQAYL RDDNEGNDGE DVITNLRNGA AVENAVSIMQ 720 ERGFSNPRRS RHRLTPGTVK FAAFHVLSLE GSKGLTILEV ADKIQKSGLR DLTTSKTPEA 780 SIAAALSRDS KLFERTAPST YCIRPAYRKD PADTDTILSA ARERIRTFKS GIVDGEDADD 840 AERDEDSESD VAEDHEIDDL GTGLNSKKVA HDSPETNEFN GKTVLGNGKE SGGLKTPQVL 900 LEKVRAGLTS LHSEGTNELK GAGSSIDESV DVAEIHTIPD QDVDIDENNL GEPWVQGLVE 960 GEYSDLSVEE RLNALVALIG VAIEGNSIRV ALEERLEAAN ALKKQMWAEA QLDKRRMKEE 1020 FVTRTQYSSF TGNKMEPNQT ISATEGRQSP MVSVDDRNNG MPVNVSVQQE QLSDQQSDMN 1080 YLNNMPFEGN MQMQDLSAGP DNLTYQQAGH IAEKSRSQLK SVIGHRAEEM YVYRSLPLGQ 1140 DRRRNRYWQF TTSASRNDPG CGRIFVELHD GRWRLIDYEE GFDTLLSSLD VRGVRESHLH 1200 AMLQKIEVPF KETMRRRMLR ANTEGQSKDP IKAEAVEMTA GPESGTGMDS PRSTVCVPDS 1260 DMSETSTSFT IELGRNEIEK NHTLKRFQDF EKWMWKECFK SSVLCAMKYE KKRCTQLLGV 1320 CDYCHDTYFF EDNHCPSCHK THASQTGLNF SEHVAHCERK LKMDPDSALC SLSFPPRIRL 1380 LKSLLALIEV SVLPEALQPV WTNGYRKSWG MKLQSSSCVD DLLQILTLLE IGMKRDYLSS 1440 NYETSSELLS SSDPSGCAAH DSFNTGTAPV LPWLPQTTAA VALRVIEFDA SISYMLHQKL 1500 ESQKDRSAGN FIKLPSKYAV MKYTPDNETT EIPHQAGLLQ EDDWVDVGIG LAGLGREQGI 1560 RGRGRGRTRG GRSQTRIIGS RSESSKRSAS RSSDRLEKVL SWTGRPRGRG GRKSGRRSIR 1620 SRQKAVKKAA EIIPERKIPK KTLYEQSTRR MGRHVRNGDE TRFHTEDAEN ASSSERSEYN 1680 DENENIPASG DEYDDQVVDD YAGGFNGKSD DLLEGSDYNI DSNEEDDDDD AMNEDEDEHG 1740 DSDVEEYINR DSDEDGIRDG GQNGAQDGTE SSSSDFSD*

Sequence ? help Back to Top

Protein Sequence Length: 1779 aa Download sequence Send to blast

MEEAGGGGGV EVEAKKKTPG EGEGESKSKR KMKSASQLEI LEKTYSVDTY PSEAARAELS  60
VQLGLSDRQL QMWFCHRRLK DRKAPLVKRP RKESPSPAGM PGGGEMGVVA EVGNEHGSGS  120
SPFVLGVDPR RAVGRPTGVA VPRISADVQA MKRYYEPQQS IAELRAVAFV EAQLGEPLRE  180
DGPILGMEFD PLPPDAFGAP IATTGQQKQS VRIEANLYER PDVKPIKSTT RTLHEYQFLP  240
QQPTVRAEAY ERAAPSCQYG SPADVHNVKT ESISATLPFM HANKQVSSGY DLSNQVPSLS  300
LMPQESRQGH LLPSTTGEYE TVIQKCSFTN IGMDAQSGAH LVTALDNPYM SSDRRVTHDE  360
DALRMQRKRK SEEARIAREV EAHEKRIRKE LEKQDILRRK REEQMRKEME KHDRERRKEE  420
ERLLREKQRE VERYQREQKR ELERREKFLQ KESIRVEKMR QKEELRREKE AARQKAATER  480
AIARRMAKES MELIDDERLE LMEMAASSKG LPSIIPLDFE TLQNLDLFRD KLTEFPPKSV  540
LLKRPFLIQP WNDSEENVGN LLMVWRFLIT FADVLGIWPF TLDEFVQAFH DYDSRLLSEV  600
HVALLKSIIK DIEDVARTPA TGLGPNQNGA ANPGGGHPQI VEGAYAWGFD LRSWQRHLNP  660
LTWPEILRQF GLSAGFGPQM KKRNVDQAYL RDDNEGNDGE DVITNLRNGA AVENAVSIMQ  720
ERGFSNPRRS RHRLTPGTVK FAAFHVLSLE GSKGLTILEV ADKIQKSGLR DLTTSKTPEA  780
SIAAALSRDS KLFERTAPST YCIRPAYRKD PADTDTILSA ARERIRTFKS GIVDGEDADD  840
AERDEDSESD VAEDHEIDDL GTGLNSKKVA HDSPETNEFN GKTVLGNGKE SGGLKTPQVL  900
LEKVRAGLTS LHSEGTNELK GAGSSIDESV DVAEIHTIPD QDVDIDENNL GEPWVQGLVE  960
GEYSDLSVEE RLNALVALIG VAIEGNSIRV ALEERLEAAN ALKKQMWAEA QLDKRRMKEE  1020
FVTRTQYSSF TGNKMEPNQT ISATEGRQSP MVSVDDRNNG MPVNVSVQQE QLSDQQSDMN  1080
YLNNMPFEGN MQMQDLSAGP DNLTYQQAGH IAEKSRSQLK SVIGHRAEEM YVYRSLPLGQ  1140
DRRRNRYWQF TTSASRNDPG CGRIFVELHD GRWRLIDYEE GFDTLLSSLD VRGVRESHLH  1200
AMLQKIEVPF KETMRRRMLR ANTEGQSKDP IKAEAVEMTA GPESGTGMDS PRSTVCVPDS  1260
DMSETSTSFT IELGRNEIEK NHTLKRFQDF EKWMWKECFK SSVLCAMKYE KKRCTQLLGV  1320
CDYCHDTYFF EDNHCPSCHK THASQTGLNF SEHVAHCERK LKMDPDSALC SLSFPPRIRL  1380
LKSLLALIEV SVLPEALQPV WTNGYRKSWG MKLQSSSCVD DLLQILTLLE IGMKRDYLSS  1440
NYETSSELLS SSDPSGCAAH DSFNTGTAPV LPWLPQTTAA VALRVIEFDA SISYMLHQKL  1500
ESQKDRSAGN FIKLPSKYAV MKYTPDNETT EIPHQAGLLQ EDDWVDVGIG LAGLGREQGI  1560
RGRGRGRTRG GRSQTRIIGS RSESSKRSAS RSSDRLEKVL SWTGRPRGRG GRKSGRRSIR  1620
SRQKAVKKAA EIIPERKIPK KTLYEQSTRR MGRHVRNGDE TRFHTEDAEN ASSSERSEYN  1680
DENENIPASG DEYDDQVVDD YAGGFNGKSD DLLEGSDYNI DSNEEDDDDD AMNEDEDEHG  1740
DSDVEEYINR DSDEDGIRDG GQNGAQDGTE SSSSDFSD*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	365	370	QRKRKS

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Highly expressed in growing tissues such as inflorescence and flower meristems, young leaves and floral organs. Expressed in roots, rosette and cauline leaves, stems, flowers, inflorescences and siliques. {ECO:0000269\|PubMed:22694359}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC (PubMed:22694359). Involved in the transcriptional regulation of seed-specific gene expression (PubMed:23872538). {ECO:0000269\|PubMed:22694359, ECO:0000269\|PubMed:23872538}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.007G135500.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC209002	0.0	AC209002.1 Populus trichocarpa clone POP040-E22, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024460587.1	0.0	homeobox-DDT domain protein RLT2 isoform X3
Swissprot	Q9FFH1	0.0	RLT2_ARATH; Homeobox-DDT domain protein RLT2
TrEMBL	A0A2K1ZTZ3	0.0	A0A2K1ZTZ3_POPTR; Uncharacterized protein
STRING	POPTR_0007s01330.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2523	33	69
Representative plant	OGRP1577	16	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.1	0.0	Homeodomain-like transcriptional regulator

Link Out ? help Back to Top
Phytozome	Potri.007G135500.1
Entrez Gene	7491716